LICENSE
MANIFEST.in
README.md
pyproject.toml
setup.py
.requirements/base.in
.requirements/dev.in
.requirements/docs.in
.requirements/extras.in
.requirements/torch_cpu.in
.requirements/torch_gpu.in
graphein/__init__.py
graphein/cli.py
graphein.egg-info/PKG-INFO
graphein.egg-info/SOURCES.txt
graphein.egg-info/dependency_links.txt
graphein.egg-info/entry_points.txt
graphein.egg-info/requires.txt
graphein.egg-info/top_level.txt
graphein/grn/__init__.py
graphein/grn/config.py
graphein/grn/edges.py
graphein/grn/graphs.py
graphein/grn/parse_regnetwork.py
graphein/grn/parse_trrust.py
graphein/grn/features/__init__.py
graphein/grn/features/node_features.py
graphein/ml/__init__.py
graphein/ml/clustering.py
graphein/ml/conversion.py
graphein/ml/diffusion.py
graphein/ml/utils.py
graphein/ml/visualisation.py
graphein/ml/datasets/__init__.py
graphein/ml/datasets/foldcomp_dataset.py
graphein/ml/datasets/pdb_data.py
graphein/ml/datasets/torch_geometric_dataset.py
graphein/ml/metrics/__init__.py
graphein/ml/metrics/gdt.py
graphein/ml/metrics/tm_score.py
graphein/molecule/__init__.py
graphein/molecule/atoms.py
graphein/molecule/chembl.py
graphein/molecule/config.py
graphein/molecule/graphs.py
graphein/molecule/utils.py
graphein/molecule/visualisation.py
graphein/molecule/zinc.py
graphein/molecule/edges/__init__.py
graphein/molecule/edges/atomic.py
graphein/molecule/edges/distance.py
graphein/molecule/features/__init__.py
graphein/molecule/features/edges/__init__.py
graphein/molecule/features/edges/bonds.py
graphein/molecule/features/graph/__init__.py
graphein/molecule/features/graph/molecule.py
graphein/molecule/features/nodes/__init__.py
graphein/molecule/features/nodes/atom_type.py
graphein/ppi/__init__.py
graphein/ppi/config.py
graphein/ppi/edges.py
graphein/ppi/graph_metadata.py
graphein/ppi/graphs.py
graphein/ppi/parse_biogrid.py
graphein/ppi/parse_stringdb.py
graphein/ppi/visualisation.py
graphein/ppi/features/__init__.py
graphein/ppi/features/node_features.py
graphein/protein/__init__.py
graphein/protein/analysis.py
graphein/protein/config.py
graphein/protein/folding_utils.py
graphein/protein/graphs.py
graphein/protein/meshes.py
graphein/protein/resi_atoms.py
graphein/protein/subgraphs.py
graphein/protein/utils.py
graphein/protein/visualisation.py
graphein/protein/edges/__init__.py
graphein/protein/edges/atomic.py
graphein/protein/edges/distance.py
graphein/protein/edges/intramolecular.py
graphein/protein/features/__init__.py
graphein/protein/features/utils.py
graphein/protein/features/data/__init__.py
graphein/protein/features/graph/__init__.py
graphein/protein/features/graph/dynamics.py
graphein/protein/features/graph/structure.py
graphein/protein/features/nodes/__init__.py
graphein/protein/features/nodes/aaindex.py
graphein/protein/features/nodes/amino_acid.py
graphein/protein/features/nodes/amino_acid_properties.csv
graphein/protein/features/nodes/dssp.py
graphein/protein/features/nodes/geometry.py
graphein/protein/features/nodes/meiler_embeddings.csv
graphein/protein/features/pretrained_models/__init__.py
graphein/protein/features/sequence/__init__.py
graphein/protein/features/sequence/embeddings.py
graphein/protein/features/sequence/propy.py
graphein/protein/features/sequence/sequence.py
graphein/protein/features/sequence/utils.py
graphein/protein/tensor/__init__.py
graphein/protein/tensor/angles.py
graphein/protein/tensor/data.py
graphein/protein/tensor/dataloader.py
graphein/protein/tensor/dataset.py
graphein/protein/tensor/edges.py
graphein/protein/tensor/geometry.py
graphein/protein/tensor/io.py
graphein/protein/tensor/plot.py
graphein/protein/tensor/pnerf.py
graphein/protein/tensor/reconstruction.py
graphein/protein/tensor/representation.py
graphein/protein/tensor/sequence.py
graphein/protein/tensor/testing.py
graphein/protein/tensor/types.py
graphein/rna/__init__.py
graphein/rna/config.py
graphein/rna/constants.py
graphein/rna/graphs.py
graphein/rna/nussinov.py
graphein/rna/subgraphs.py
graphein/rna/utils.py
graphein/rna/visualisation.py
graphein/rna/edges/__init__.py
graphein/rna/edges/atomic.py
graphein/rna/edges/base_pairing.py
graphein/rna/edges/distance.py
graphein/rna/features/__init__.py
graphein/rna/features/atom.py
graphein/testing/__init__.py
graphein/testing/utils.py
graphein/utils/__init__.py
graphein/utils/config.py
graphein/utils/config_parser.py
graphein/utils/dependencies.py
graphein/utils/utils.py
graphein/utils/pymol/__init__.py
graphein/utils/pymol/compat.py
graphein/utils/pymol/core.py
tests/__init__.py
tests/conftest.py
tests/test_graphein.py
tests/datasets/__init__.py
tests/datasets/pdb_data.py
tests/grn/__init__.py
tests/grn/test_graphs.py
tests/ml/__init__.py
tests/ml/test_conversion.py
tests/ml/test_torch_geometric_dataset.py
tests/ppi/__init__.py
tests/ppi/test_graphs.py
tests/protein/__init__.py
tests/protein/test_graphs.py
tests/protein/test_subgraphs.py
tests/protein/test_utils.py
tests/protein/edges/__init__.py
tests/protein/edges/test_distance.py
tests/protein/nodes/__init__.py
tests/protein/nodes/features/__init__.py
tests/protein/nodes/features/test_amino_acid.py
tests/protein/nodes/features/test_dssp.py
tests/protein/nodes/features/test_geometry.py
tests/protein/tensor/__init__.py
tests/protein/tensor/test_angles.py
tests/protein/tensor/test_data.py
tests/protein/tensor/test_geometry.py
tests/protein/tensor/test_io.py
tests/protein/tensor/test_reconstruction.py
tests/protein/tensor/test_representation.py
tests/protein/tensor/test_sequence.py
tests/rna/__init__.py
tests/rna/test_graphs.py
tests/rna/test_nussinov.py
tests/rna/test_subgraphs.py
tests/testing/__init__.py
tests/testing/utils.py
tests/utils/__init__.py
tests/utils/test_cli.py
tests/utils/test_yml_parser.py