MANIFEST.in
README.md
setup.py
graph_peak_caller/__init__.py
graph_peak_caller/callpeaks.py
graph_peak_caller/callpeaks_interface.py
graph_peak_caller/command_line_interface.py
graph_peak_caller/custom_exceptions.py
graph_peak_caller/cut_narrowpeak_around_summit.py
graph_peak_caller/eventsorter.py
graph_peak_caller/haplotyping.py
graph_peak_caller/intervals.py
graph_peak_caller/linear_filter.py
graph_peak_caller/logging_config.py
graph_peak_caller/mindense.py
graph_peak_caller/multiplegraphscallpeaks.py
graph_peak_caller/peakcollection.py
graph_peak_caller/peakfasta.py
graph_peak_caller/preprocess_interface.py
graph_peak_caller/reporter.py
graph_peak_caller/sparsediffs.py
graph_peak_caller/sparsepvalues.py
graph_peak_caller/summits.py
graph_peak_caller/util.py
graph_peak_caller.egg-info/PKG-INFO
graph_peak_caller.egg-info/SOURCES.txt
graph_peak_caller.egg-info/dependency_links.txt
graph_peak_caller.egg-info/entry_points.txt
graph_peak_caller.egg-info/not-zip-safe
graph_peak_caller.egg-info/requires.txt
graph_peak_caller.egg-info/top_level.txt
graph_peak_caller/analysis/__init__.py
graph_peak_caller/analysis/__init__.pyc
graph_peak_caller/analysis/analyse_peaks.py
graph_peak_caller/analysis/analysis_interface.py
graph_peak_caller/analysis/datatables.py
graph_peak_caller/analysis/differentialbinding.py
graph_peak_caller/analysis/fimowrapper.py
graph_peak_caller/analysis/genotype_matrix.py
graph_peak_caller/analysis/haplotype_finder.py
graph_peak_caller/analysis/manually_classified_peaks.py
graph_peak_caller/analysis/motifenrichment.py
graph_peak_caller/analysis/motiflocations.py
graph_peak_caller/analysis/nongraphpeaks.py
graph_peak_caller/analysis/nongraphpeaks.pyc
graph_peak_caller/analysis/peakscomparer.py
graph_peak_caller/analysis/util.py
graph_peak_caller/analysis/venn_diagrams.py
graph_peak_caller/control/__init__.py
graph_peak_caller/control/__init__.pyc
graph_peak_caller/control/controlgenerator.py
graph_peak_caller/control/controlgenerator.pyc
graph_peak_caller/control/linearintervals.py
graph_peak_caller/control/linearintervals.pyc
graph_peak_caller/control/linearmap.py
graph_peak_caller/control/linearmap.pyc
graph_peak_caller/control/linearpileup.py
graph_peak_caller/control/linearpileup.pyc
graph_peak_caller/dm_test_data/test.py
graph_peak_caller/idrtestsimulation/generate_track.py
graph_peak_caller/legacy/__init__.py
graph_peak_caller/legacy/areas.py
graph_peak_caller/legacy/dagholecleaner.py
graph_peak_caller/legacy/densepileupindex.py
graph_peak_caller/legacy/extender.py
graph_peak_caller/legacy/pvalues.py
graph_peak_caller/legacy/snarlmaps.py
graph_peak_caller/legacy/snarls.py
graph_peak_caller/legacy/sparsepileup.py
graph_peak_caller/legacy/sparsepileupv2.py
graph_peak_caller/legacy/subgraphcollection.py
graph_peak_caller/postprocess/__init__.py
graph_peak_caller/postprocess/__init__.pyc
graph_peak_caller/postprocess/graphs.py
graph_peak_caller/postprocess/holecleaner.py
graph_peak_caller/postprocess/maxpaths.py
graph_peak_caller/postprocess/maxpaths.pyc
graph_peak_caller/postprocess/segmentanalyzer.py
graph_peak_caller/postprocess/segmentanalyzer.pyc
graph_peak_caller/postprocess/subgraphanalyzer.py
graph_peak_caller/sample/__init__.py
graph_peak_caller/sample/__init__.pyc
graph_peak_caller/sample/sparsegraphpileup.py
graph_peak_caller/sample/sparsegraphpileup.pyc
graph_peak_caller/shiftestimation/__init__.py
graph_peak_caller/shiftestimation/peakmodel.py
graph_peak_caller/shiftestimation/shift_estimation_multigraph.py
graph_peak_caller/shiftestimation/shiftestimation.py