from .core_grandpy import GrandPy
from .load import DESIGN_KEYS, semantics_time, read_grand, classify_genes, parse_time_string
from .plot import (
    plot_scatter,
    plot_heatmap,
    plot_pca,
    plot_gene_groups_points,
    plot_gene_groups_bars,
    plot_gene_old_vs_new,
    plot_gene_total_vs_ntr,
    plot_gene_progressive_timecourse,
    plot_gene_snapshot_timecourse,
    plot_type_distribution,
    plot_expression_test,
    plot_vulcano,
    plot_ma,
    format_correlation
)

from .utils import concat, read_h5ad, anndata_to_grandpy
from .slot_tool import ModeSlot
from .plot_tool import Plot
from .lfc import psi_lfc, norm_lfc

__all__ = [
    "GrandPy",
    "anndata_to_grandpy",
    "read_h5ad",
    "classify_genes",
    "semantics_time",
    "DESIGN_KEYS",
    "read_grand",
    "parse_time_string",
    "plot_scatter",
    "plot_heatmap",
    "plot_pca",
    "plot_gene_groups_points",
    "plot_gene_groups_bars",
    "plot_gene_old_vs_new",
    "plot_gene_total_vs_ntr",
    "plot_gene_progressive_timecourse",
    "plot_gene_snapshot_timecourse",
    "plot_type_distribution",
    "plot_expression_test",
    "plot_vulcano",
    "plot_ma",
    "format_correlation",
    "concat",
    "ModeSlot",
    "Plot",
    "psi_lfc",
    "norm_lfc",
]