LICENCE.txt
MANIFEST.in
README.md
setup.py
bin/graftM
graftm/__init__.py
graftm/bootstrapper.py
graftm/classify.py
graftm/clusterer.py
graftm/create.py
graftm/db_search_results.py
graftm/decorator.py
graftm/deduplicator.py
graftm/diamond.py
graftm/getaxnseq.py
graftm/graftm_output_paths.py
graftm/graftm_package.py
graftm/greengenes_taxonomy.py
graftm/hmmer.py
graftm/hmmsearcher.py
graftm/housekeeping.py
graftm/orfm.py
graftm/pplacer.py
graftm/prerequisite_checker.py
graftm/readHmmTable.py
graftm/reannotator.py
graftm/rerooter.py
graftm/run.py
graftm/scikit_tree_rerooter.py
graftm/search_table.py
graftm/sequence_io.py
graftm/sequence_search_results.py
graftm/summarise.py
graftm/taxonomy_extractor.py
graftm/timeit.py
graftm/tree_cleaner.py
graftm/tree_decorator.py
graftm/unpack_sequences.py
graftm/version.py
graftm.egg-info/PKG-INFO
graftm.egg-info/SOURCES.txt
graftm.egg-info/dependency_links.txt
graftm.egg-info/requires.txt
graftm.egg-info/top_level.txt
share/18S.hmm
test/test_bootstrapper.py
test/test_create.py
test/test_deduplicator.py
test/test_diamond.py
test/test_getaxnseq.py
test/test_graft.py
test/test_graftm_package.py
test/test_greengenes_taxonomy.py
test/test_guess_sequence_type.py
test/test_hmmer.py
test/test_hmmsearcher.py
test/test_reannotator.py
test/test_sequence_search_result.py
test/test_summarise.py
test/test_taxonomy_extractor.py
test/test_tree_cleaner.py