GPSEA cohort analysis

Successfully loaded {{ n_individuals }} individuals.

{% if n_excluded > 0 %}

Not able to load {{ n_excluded }} individuals.

{% else %}

No errors encountered.

{% endif %} {% for hpo_count in hpo_counts %} {% endfor %}

Top {{top_hpo_count}} HPO Terms
A total of {{ total_hpo_count }} HPO terms were used to annotated the cohort.
HPO Term	ID	Seen in n individuals
{{ hpo_count.HPO }}	{{ hpo_count.ID }}	{{ hpo_count.Count }}

{% for var_count in var_counts %} {% endfor %}

Top {{top_var_count}} Variants
Variants are shown according to {{ transcript_id }}. A total of {{ unique_variant_count}} unique variants were identified in the cohort.
Count	Variant key	Variant Name	Protein Variant	Variant Class
{{ var_count.Count }}	{{ var_count.variant }}	{{ var_count.variant_name }}	{{ var_count.protein_name }}	{{ var_count.variant_effects }}

{% for disease_count in disease_counts %} {% endfor %}

Diseases
Disease Name	Disease ID	Annotation Count
{{ disease_count.disease_name }}	{{ disease_count.disease_id }}	{{ disease_count.count }}

{% if has_transcript > 0 %} {% for var_effect in var_effects_list %} {% endfor %}

Variant categories for {{ transcript_id }}
Variant effect	Annotation Count	Percent
{{ var_effect.effect }}	{{ var_effect.count }}	{{ var_effect.percent }}

{% else %}

Call this function with transcript to see table with variant effect counts.

{% endif %}