.gitignore
LICENSE
README.md
requirements.txt
setup.py
figures/bandage_path.jpg
figures/gplasCClogo.png
figures/my_isolate_plasmidome_network.png
gplas/.gitkeep
gplas/__init__.py
gplas/gplas.py
gplas/logo.txt
gplas/version.py
gplas.egg-info/PKG-INFO
gplas.egg-info/SOURCES.txt
gplas.egg-info/dependency_links.txt
gplas.egg-info/entry_points.txt
gplas.egg-info/requires.txt
gplas.egg-info/top_level.txt
gplas/scripts/__init__.py
gplas/scripts/check_prediction_format.py
gplas/scripts/coocurrence.py
gplas/scripts/coocurrence_repeats.py
gplas/scripts/coverage.py
gplas/scripts/node_extraction.py
gplas/scripts/paths.py
gplas/scripts/paths_repeats.py
gplas/scripts/run_plasmidcc.py
gplas/scripts/utils.py
test_data/test_ecoli.gfa
test_data/test_ecoli_plasmid_prediction.tab
test_data/test_ecoli_spades.gfa
test_data/test_ecoli_spades_plasmid_prediction.tab