# commands/__init__.py
"""
Command modules for gpathex.
"""

__all__ = [
    "download_org_main",
    "download_ko_main",
    "download_proteins_main",
    "process_proteins_main",
    "makedb_main",
    "make_keg_main",
    "get_ranks_main",
]

# Import command functions
from .download_org import main as download_org_main
from .download_ko import main as download_ko_main
from .download_proteins import main as download_proteins_main
from .process_proteins import main as process_proteins_main
from .makedb import main as makedb_main
from .make_keg import main as make_keg_main
from .get_ranks import main as get_ranks_main

# Plotting functions
from .plot_keg import (
    plot_kegg_kos_results,
    plot_kegg_genes_results,
    main_plot_kos as plot_keg_kos_main,
    main_plot_genes as plot_keg_genes_main
)
