.gitignore
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AGENTS.md
CHANGELOG.md
CODE_OF_CONDUCT.md
CONTRIBUTING.md
LICENSE
README.md
mkdocs.yml
pyproject.toml
uv.lock
.github/workflows/docs.yml
.github/workflows/publish.yml
.github/workflows/tests.yml
docs/.gitkeep
docs/api.md
docs/examples.md
docs/index.md
docs/vignettes.ipynb
docs/static/gopher_tree_search.png
docs/static/gopher_workflow.svg
docs/static/mann_whitney_u.png
docs/static/prot_quant.txt
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src/gopher/__init__.py
src/gopher/annotations.py
src/gopher/config.py
src/gopher/display_data.py
src/gopher/enrichment.py
src/gopher/gopher.py
src/gopher/graph_search.py
src/gopher/normalize.py
src/gopher/ontologies.py
src/gopher/stats.py
src/gopher/tree_search.py
src/gopher/utils.py
src/gopher/version.py
src/gopher/parsers/__init__.py
src/gopher/parsers/tabular.py
src/gopher_enrich.egg-info/PKG-INFO
src/gopher_enrich.egg-info/SOURCES.txt
src/gopher_enrich.egg-info/dependency_links.txt
src/gopher_enrich.egg-info/entry_points.txt
src/gopher_enrich.egg-info/requires.txt
src/gopher_enrich.egg-info/top_level.txt
tests/conftest.py
tests/data/df.csv
tests/data/small-human.fasta
tests/data/small-yeast.fasta
tests/data/yeast_small.csv
tests/system_tests/.gitkeep
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tests/unit_tests/graph_test.py
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