CHANGELOG.rst
LICENSE
MANIFEST.in
README.rst
setup.py
docs/Makefile
docs/make.bat
docs/rtd_requirements.txt
docs/run_sphinx-apidoc.sh
docs/source/citing.rst
docs/source/cli.rst
docs/source/conf.py
docs/source/demos.rst
docs/source/gene_set_files.rst
docs/source/gene_sets.rst
docs/source/go_annotations.rst
docs/source/go_pca.rst
docs/source/index.rst
docs/source/install.rst
docs/source/install_mac.rst
docs/source/install_ubuntu.rst
docs/source/install_windows.rst
docs/source/intro.rst
docs/source/license.rst
docs/source/running.rst
docs/source/_static/gopca.png
docs/source/api/config.rst
docs/source/api/gopca.rst
docs/source/api/index.rst
docs/source/api/params.rst
docs/source/api/run.rst
docs/source/api/signature.rst
docs/source/api/signature_matrix.rst
docs/source/notebooks/DMAP_analysis.ipynb
docs/source/notebooks/Demo_DMAP.ipynb
gopca/__init__.py
gopca/config.py
gopca/go_pca.py
gopca/main.py
gopca/params.py
gopca/run.py
gopca/signature.py
gopca/signature_matrix.py
gopca/util.py
gopca.egg-info/PKG-INFO
gopca.egg-info/SOURCES.txt
gopca.egg-info/dependency_links.txt
gopca.egg-info/entry_points.txt
gopca.egg-info/requires.txt
gopca.egg-info/top_level.txt
gopca/cli/__init__.py
gopca/cli/arguments.py
gopca/cli/combine_signatures.py
gopca/cli/convert_to_matlab.py
gopca/cli/extract_signature_matrix.py
gopca/cli/extract_signatures.py
gopca/cli/extract_signatures_excel.py
gopca/cli/filter_signatures.py
gopca/cli/print_info.py
tests/01_fake_data/conftest.py
tests/01_fake_data/test_config.py
tests/01_fake_data/test_gopca.py
tests/01_fake_data/test_params.py
tests/01_fake_data/test_signature.py
tests/01_fake_data/test_signature_matrix.py
tests/02_real_data/conftest.py
tests/02_real_data/test_real_gopca.py
tests/02_real_data/test_real_signature_matrix.py
tests/02_real_data/01_cli/test_go_pca.py
tests/02_real_data/01_cli/test_print_info.py