#Change Log
All notable changes to this project will be documented in this file.

The format is based on [Keep a Changelog](http://keepachangelog.com/)
and this project adheres to [Semantic Versioning](http://semver.org/).

## [1.2.1] - 2023-06-15

### Added
- remap_goterms function and sub-command to CLI.

### Changed
- create_subgraphs Python API.
- categorize_dataset Python API.
- If you previously used create_subgraphs or categorize_dataset within a Python shell or Python script, you will need to update your code. 
- Documentation in the guide and tutorial.

## [1.1.7] - 2020-09-26
- Updated relationship_mapping in the GoParser to capture new "term_tracker_item" added to GO. Fixes issue #13: preventing newer versions of GO from being built within GOcats. 

## [1.1.6] - 2019-11-25
- Fixed an issue related to setting max field_size_limit for CSV and creating OverflowErrors on some systems.

## [1.1.4] - 2018-04-02
- Hotfix: Fixed handling of edge case where a subgraph is attempted to be built on a set of seeded nodes that are exclusively leaves of the supergraph.
- Added CategoryNode object on SubGraph which replaces much of the functionality of the previous version's SubGraph.representative_node data member.
- CategoryNode contains a list called representative_nodes, which allows the subgraph to be rooted to multiple nodes if needed.

## [1.1.3a] - 2018-03-15
- Hotfix: Optimizing deployment options; adding bdist_wheel to setup script.

## [1.1.3] - 2018-03-13
- Hotfix: Fixed issues in CD/CI scripts.

## [1.1.2] - 2018-03-13
- Added new options for traversing relationship directionality in ontologyparser. Can now utilize GOcats' directionality or original directionality.

## [1.1.1] - 2017-06-07
- Hotfix: Edited glaring issues in documentation. Updated installation instructions for pip and resolved merge conflicts.

## [1.1.0] - 2017-06-01
- Added PyPi distribution configuration and documentation files.
- Started PyPi versioning based on the current release available on Github (https://github.com/MoseleyBioinformaticsLab/GOcats).

