MANIFEST.in
README.md
setup.py
examples/data/mouse/pheno
examples/data/mouse/plink.bed
examples/data/mouse/plink.bim
examples/data/mouse/plink.fam
examples/data/mouse/readme
examples/data/mouse_long/phe.balance.txt
examples/data/mouse_long/phe.unbalance.txt
examples/data/mouse_long/plink.bed
examples/data/mouse_long/plink.bim
examples/data/mouse_long/plink.fam
examples/data/mouse_long/readme
examples/data/yeast/CobaltChloride
examples/data/yeast/CobaltChloride.bed
examples/data/yeast/CobaltChloride.bim
examples/data/yeast/CobaltChloride.fam
examples/data/yeast/readme
examples/gmat/cal_agmat.py
examples/gmat/cal_dgmat.py
examples/longwas/balance_test.py
examples/longwas/test.py
examples/longwas/unbalance_test.py
examples/remma/remma_add_cpu.py
examples/remma/remma_cpu.py
examples/uvlmm/uvlmm_varcom.py
gmat/__init__.py
gmat.egg-info/PKG-INFO
gmat.egg-info/SOURCES.txt
gmat.egg-info/dependency_links.txt
gmat.egg-info/requires.txt
gmat.egg-info/top_level.txt
gmat/bayes/__init__.py
gmat/bayes/bayesA.py
gmat/common/__init__.py
gmat/common/common.py
gmat/gmatrix/__init__.py
gmat/gmatrix/gmatrix.py
gmat/longwas/__init__.py
gmat/longwas/common.py
gmat/longwas/balance/__init__.py
gmat/longwas/balance/balance_emai.py
gmat/longwas/balance/balance_longwas_emai.py
gmat/longwas/balance/balance_longwas_fixed.py
gmat/longwas/balance/balance_longwas_fixed_permutation.py
gmat/longwas/balance/balance_longwas_trans.py
gmat/longwas/balance/balance_longwas_trans_permutation.py
gmat/longwas/balance/balance_varcom.py
gmat/longwas/balance/common.py
gmat/longwas/balance/iter_mat.py
gmat/longwas/balance/pre_mat.py
gmat/longwas/unbalance/__init__.py
gmat/longwas/unbalance/common.py
gmat/longwas/unbalance/iter_mat.py
gmat/longwas/unbalance/pre_mat.py
gmat/longwas/unbalance/unbalance_emai.py
gmat/longwas/unbalance/unbalance_longwas_fixed.py
gmat/longwas/unbalance/unbalance_longwas_fixed_permutation.py
gmat/longwas/unbalance/unbalance_longwas_trans.py
gmat/longwas/unbalance/unbalance_longwas_trans_permutation.py
gmat/longwas/unbalance/unbalance_varcom.py
gmat/mdlearn/__init__.py
gmat/mvlmm/__init__.py
gmat/pedigree/__init__.py
gmat/pedigree/process_pedigree.py
gmat/process_plink/__init__.py
gmat/process_plink/_build.py
gmat/process_plink/_read_plink_bed.c
gmat/process_plink/process_plink.py
gmat/process_plink/read_plink_bed.py
gmat/remma/__init__.py
gmat/remma/_build.py
gmat/remma/_remma_epi_eff_cpu.c
gmat/remma/annotation.py
gmat/remma/random_pair.py
gmat/remma/remma_add.py
gmat/remma/remma_dom.py
gmat/remma/remma_epiAA/__init__.py
gmat/remma/remma_epiAA/remma_epiAA.py
gmat/remma/remma_epiAA/remma_epiAA_approx.py
gmat/remma/remma_epiAA/remma_epiAA_eff.py
gmat/remma/remma_epiAA/remma_epiAA_maf_approx.py
gmat/remma/remma_epiAA/remma_epiAA_maf_eff.py
gmat/remma/remma_epiAA/remma_epiAA_pair.py
gmat/remma/remma_epiAD/__init__.py
gmat/remma/remma_epiAD/remma_epiAD.py
gmat/remma/remma_epiAD/remma_epiAD_approx.py
gmat/remma/remma_epiAD/remma_epiAD_eff.py
gmat/remma/remma_epiAD/remma_epiAD_maf_approx.py
gmat/remma/remma_epiAD/remma_epiAD_maf_eff.py
gmat/remma/remma_epiAD/remma_epiAD_pair.py
gmat/remma/remma_epiDD/__init__.py
gmat/remma/remma_epiDD/remma_epiDD.py
gmat/remma/remma_epiDD/remma_epiDD_approx.py
gmat/remma/remma_epiDD/remma_epiDD_eff.py
gmat/remma/remma_epiDD/remma_epiDD_maf_approx.py
gmat/remma/remma_epiDD/remma_epiDD_maf_eff.py
gmat/remma/remma_epiDD/remma_epiDD_pair.py
gmat/remma/simu/__init__.py
gmat/remma/simu/simu.py
gmat/uvlmm/__init__.py
gmat/uvlmm/design_matrix.py
gmat/uvlmm/lm.py
gmat/uvlmm/uvlmm_gwas.py
gmat/uvlmm/uvlmm_varcom.py
gmat/uvlmm/uvlmm_varcom_eigen.py
gmat/uvlmm/varcom/__init__.py
gmat/uvlmm/varcom/ai.py
gmat/uvlmm/varcom/em.py
gmat/uvlmm/varcom/em2.py
gmat/uvlmm/varcom/em22.py
gmat/uvlmm/varcom/em2ai.py
gmat/uvlmm/varcom/pxem.py
gmat/uvlmm/varcom/pxem2.py
gmat/uvlmm/varcom/pxem2ai.py
gmat/uvlmm/varcom/weight_emai.py
gmat/uvlmm/varcom/weight_pxemai.py