from sqlalchemy import exc, func
from sqlalchemy.orm.session import object_session

from glycresoft.serialize.base import Base

from glycresoft.serialize.connection import DatabaseBoundOperation, ConnectFrom

from glycresoft.serialize.spectrum import (
    SampleRun,
    MSScan,
    PrecursorInformation,
    DeconvolutedPeak)

from glycresoft.serialize.analysis import (
    Analysis,
    BoundToAnalysis,
    AnalysisTypeEnum)

from glycresoft.serialize.chromatogram import (
    ChromatogramTreeNode,
    Chromatogram,
    ChromatogramSolution,
    MassShift,
    CompositionGroup,
    CompoundMassShift,
    UnidentifiedChromatogram,
    GlycanCompositionChromatogram,
    ChromatogramSolutionMassShiftedToChromatogramSolution)

from glycresoft.serialize.tandem import (
    GlycopeptideSpectrumCluster,
    GlycopeptideSpectrumMatch,
    GlycopeptideSpectrumSolutionSet,
    GlycanCompositionSpectrumCluster,
    GlycanCompositionSpectrumSolutionSet,
    GlycanCompositionSpectrumMatch,
    UnidentifiedSpectrumCluster,
    UnidentifiedSpectrumSolutionSet,
    UnidentifiedSpectrumMatch,
    GlycopeptideSpectrumMatchScoreSet,
    )

from glycresoft.serialize.identification import (
    IdentifiedGlycopeptide,
    AmbiguousGlycopeptideGroup)

from glycresoft.serialize.serializer import (
    AnalysisSerializer,
    AnalysisDeserializer,
    DatabaseScanDeserializer,
    DatabaseBoundOperation)

from glycresoft.serialize.hypothesis import *

# from glycresoft.serialize.migration import (
#     GlycanCompositionChromatogramAnalysisSerializer,
#     GlycopeptideMSMSAnalysisSerializer)

from glycresoft.serialize import config

import sys
from glycresoft.serialize import spectrum

sys.modules['ms_deisotope.output.db'] = spectrum
