MANIFEST.in
README.md
pyproject.toml
requirements.txt
setup.py
src/glycopeptidepy/__init__.py
src/glycopeptidepy/algorithm.py
src/glycopeptidepy/enzyme.py
src/glycopeptidepy/version.py
src/glycopeptidepy.egg-info/PKG-INFO
src/glycopeptidepy.egg-info/SOURCES.txt
src/glycopeptidepy.egg-info/dependency_links.txt
src/glycopeptidepy.egg-info/not-zip-safe
src/glycopeptidepy.egg-info/requires.txt
src/glycopeptidepy.egg-info/top_level.txt
src/glycopeptidepy/_c/__init__.py
src/glycopeptidepy/_c/algorithm.c
src/glycopeptidepy/_c/algorithm.pyx
src/glycopeptidepy/_c/collectiontools.c
src/glycopeptidepy/_c/collectiontools.pxd
src/glycopeptidepy/_c/collectiontools.pyx
src/glycopeptidepy/_c/compat.h
src/glycopeptidepy/_c/compat.pxd
src/glycopeptidepy/_c/count_table.c
src/glycopeptidepy/_c/count_table.pxd
src/glycopeptidepy/_c/count_table.pyx
src/glycopeptidepy/_c/cythonize.py
src/glycopeptidepy/_c/parser.c
src/glycopeptidepy/_c/parser.pxd
src/glycopeptidepy/_c/parser.pyx
src/glycopeptidepy/_c/structure/__init__.py
src/glycopeptidepy/_c/structure/base.c
src/glycopeptidepy/_c/structure/base.pxd
src/glycopeptidepy/_c/structure/base.pyx
src/glycopeptidepy/_c/structure/constants.c
src/glycopeptidepy/_c/structure/constants.pxd
src/glycopeptidepy/_c/structure/constants.pyx
src/glycopeptidepy/_c/structure/fragment.c
src/glycopeptidepy/_c/structure/fragment.pxd
src/glycopeptidepy/_c/structure/fragment.pyx
src/glycopeptidepy/_c/structure/glycan.c
src/glycopeptidepy/_c/structure/glycan.pxd
src/glycopeptidepy/_c/structure/glycan.pyx
src/glycopeptidepy/_c/structure/sequence_methods.c
src/glycopeptidepy/_c/structure/sequence_methods.pxd
src/glycopeptidepy/_c/structure/sequence_methods.pyx
src/glycopeptidepy/_c/structure/fragmentation_strategy/__init__.py
src/glycopeptidepy/_c/structure/fragmentation_strategy/base.c
src/glycopeptidepy/_c/structure/fragmentation_strategy/base.pxd
src/glycopeptidepy/_c/structure/fragmentation_strategy/base.pyx
src/glycopeptidepy/_c/structure/fragmentation_strategy/glycan.c
src/glycopeptidepy/_c/structure/fragmentation_strategy/glycan.pxd
src/glycopeptidepy/_c/structure/fragmentation_strategy/glycan.pyx
src/glycopeptidepy/_c/structure/fragmentation_strategy/peptide.c
src/glycopeptidepy/_c/structure/fragmentation_strategy/peptide.pxd
src/glycopeptidepy/_c/structure/fragmentation_strategy/peptide.pyx
src/glycopeptidepy/_c/structure/modification/__init__.py
src/glycopeptidepy/_c/structure/modification/modification.c
src/glycopeptidepy/_c/structure/modification/modification.pxd
src/glycopeptidepy/_c/structure/modification/modification.pyx
src/glycopeptidepy/_c/structure/modification/rule.c
src/glycopeptidepy/_c/structure/modification/rule.pxd
src/glycopeptidepy/_c/structure/modification/rule.pyx
src/glycopeptidepy/_c/structure/modification/source.c
src/glycopeptidepy/_c/structure/modification/source.pxd
src/glycopeptidepy/_c/structure/modification/source.pyx
src/glycopeptidepy/_c/structure/modification/target.pyx
src/glycopeptidepy/io/__init__.py
src/glycopeptidepy/io/annotation.py
src/glycopeptidepy/io/fasta.py
src/glycopeptidepy/io/mzid.py
src/glycopeptidepy/io/nextprot.py
src/glycopeptidepy/io/uniprot.py
src/glycopeptidepy/io/utils.py
src/glycopeptidepy/io/cv/__init__.py
src/glycopeptidepy/io/cv/peff.py
src/glycopeptidepy/io/cv/term.py
src/glycopeptidepy/io/cv/uniprot_ptm.py
src/glycopeptidepy/io/cv/data/__init__.py
src/glycopeptidepy/structure/__init__.py
src/glycopeptidepy/structure/base.py
src/glycopeptidepy/structure/composition.py
src/glycopeptidepy/structure/constants.py
src/glycopeptidepy/structure/fragment.py
src/glycopeptidepy/structure/glycan.py
src/glycopeptidepy/structure/parser.py
src/glycopeptidepy/structure/residue.py
src/glycopeptidepy/structure/sequence_composition.py
src/glycopeptidepy/structure/terminal_group.py
src/glycopeptidepy/structure/fragmentation_strategy/__init__.py
src/glycopeptidepy/structure/fragmentation_strategy/base.py
src/glycopeptidepy/structure/fragmentation_strategy/glycan.py
src/glycopeptidepy/structure/fragmentation_strategy/peptide.py
src/glycopeptidepy/structure/modification/__init__.py
src/glycopeptidepy/structure/modification/descriptors.py
src/glycopeptidepy/structure/modification/glycosylation.py
src/glycopeptidepy/structure/modification/modification.py
src/glycopeptidepy/structure/modification/rule.py
src/glycopeptidepy/structure/modification/source.py
src/glycopeptidepy/structure/modification/target.py
src/glycopeptidepy/structure/modification/utils.py
src/glycopeptidepy/structure/modification/data/ProteinProspectorModifications-for_gly2.csv
src/glycopeptidepy/structure/modification/data/__init__.py
src/glycopeptidepy/structure/modification/data/patch_unimod.py
src/glycopeptidepy/structure/modification/data/unimod.json
src/glycopeptidepy/structure/modification/data/unimod.py
src/glycopeptidepy/structure/sequence/__init__.py
src/glycopeptidepy/structure/sequence/base.py
src/glycopeptidepy/structure/sequence/glycosylated_sequence.py
src/glycopeptidepy/structure/sequence/implementation.py
src/glycopeptidepy/structure/sequence/mutable_sequence.py
src/glycopeptidepy/test/__init__.py
src/glycopeptidepy/test/sequence_test_suite.py
src/glycopeptidepy/utils/__init__.py
src/glycopeptidepy/utils/collectiontools.py
src/glycopeptidepy/utils/intervals.py
src/glycopeptidepy/utils/iterators.py
src/glycopeptidepy/utils/memoize.py
src/glycopeptidepy/utils/sequence_tree.py
tests/test_algorithms.py
tests/test_enzyme.py
tests/test_fasta.py
tests/test_fragment.py
tests/test_fragmentation_strategy.py
tests/test_intervals.py
tests/test_modification.py
tests/test_residue.py
tests/test_sequence.py
tests/test_sequence_composition.py
tests/test_uniprot.py
tests/test_utils.py