LICENSE
MANIFEST.in
README.md
pyproject.toml
requirements.txt
setup.py
src/glycopeptide_feature_learning/__init__.py
src/glycopeptide_feature_learning/amino_acid_classification.py
src/glycopeptide_feature_learning/approximation.py
src/glycopeptide_feature_learning/common.py
src/glycopeptide_feature_learning/common_features.py
src/glycopeptide_feature_learning/data_source.py
src/glycopeptide_feature_learning/matching.py
src/glycopeptide_feature_learning/multinomial_regression.py
src/glycopeptide_feature_learning/oxonium.py
src/glycopeptide_feature_learning/partitions.py
src/glycopeptide_feature_learning/peak_relations.py
src/glycopeptide_feature_learning/plot.py
src/glycopeptide_feature_learning/tool.py
src/glycopeptide_feature_learning/utils.py
src/glycopeptide_feature_learning/version.py
src/glycopeptide_feature_learning.egg-info/PKG-INFO
src/glycopeptide_feature_learning.egg-info/SOURCES.txt
src/glycopeptide_feature_learning.egg-info/dependency_links.txt
src/glycopeptide_feature_learning.egg-info/entry_points.txt
src/glycopeptide_feature_learning.egg-info/not-zip-safe
src/glycopeptide_feature_learning.egg-info/requires.txt
src/glycopeptide_feature_learning.egg-info/top_level.txt
src/glycopeptide_feature_learning/_c/__init__.py
src/glycopeptide_feature_learning/_c/amino_acid_classification.c
src/glycopeptide_feature_learning/_c/amino_acid_classification.pxd
src/glycopeptide_feature_learning/_c/amino_acid_classification.pyx
src/glycopeptide_feature_learning/_c/approximation.c
src/glycopeptide_feature_learning/_c/approximation.pxd
src/glycopeptide_feature_learning/_c/approximation.pyx
src/glycopeptide_feature_learning/_c/data_source.c
src/glycopeptide_feature_learning/_c/data_source.pxd
src/glycopeptide_feature_learning/_c/data_source.pyx
src/glycopeptide_feature_learning/_c/model_types.c
src/glycopeptide_feature_learning/_c/model_types.pxd
src/glycopeptide_feature_learning/_c/model_types.pyx
src/glycopeptide_feature_learning/_c/peak_relations.c
src/glycopeptide_feature_learning/_c/peak_relations.pxd
src/glycopeptide_feature_learning/_c/peak_relations.pyx
src/glycopeptide_feature_learning/data/pearson.txt
src/glycopeptide_feature_learning/scoring/__init__.py
src/glycopeptide_feature_learning/scoring/base.py
src/glycopeptide_feature_learning/scoring/fdr_model.py
src/glycopeptide_feature_learning/scoring/predicate.py
src/glycopeptide_feature_learning/scoring/scorer.py
src/glycopeptide_feature_learning/scoring/_c/__init__.py
src/glycopeptide_feature_learning/scoring/_c/score_set.c
src/glycopeptide_feature_learning/scoring/_c/score_set.pxd
src/glycopeptide_feature_learning/scoring/_c/score_set.pyx
src/glycopeptide_feature_learning/scoring/_c/scorer.c
src/glycopeptide_feature_learning/scoring/_c/scorer.pxd
src/glycopeptide_feature_learning/scoring/_c/scorer.pyx
tests/test_cli.py
tests/test_data_source.py
tests/test_multinomial_models.py
tests/test_scorer.py