.gitignore
.readthedocs.yml
CHANGES.md
LICENSE
README.md
codecov.yml
environment.yml
setup.cfg
setup.py
tox.ini
.github/release.yml
.github/workflows/ci_workflows.yml
.github/workflows/python-package-conda.yml
.github/workflows/static.yml
.github/workflows/update-changelog.yaml
docs/Makefile
docs/make.bat
docs/requirements.txt
docs/source/conf.py
docs/source/index.rst
docs/source/_static/style.css
docs/source/api/index.rst
docs/source/api/reference/analysis.rst
docs/source/api/reference/imagingdata.rst
docs/source/api/reference/io.rst
docs/source/api/reference/singlecelldata.rst
docs/source/api/reference/viewers.rst
docs/source/api/reference/api/glue_genes.glue_genomics_data.bed_factory.read_bed.rst
docs/source/api/reference/api/glue_genes.glue_genomics_data.bigwig_factory.read_bigwig.rst
docs/source/api/reference/api/glue_genes.glue_genomics_data.geojson_factory.read_geojson.rst
docs/source/api/reference/api/glue_genes.glue_genomics_data.multires_data.MultiResolutionData.rst
docs/source/api/reference/api/glue_genes.glue_genomics_data.multires_data.ReducedResolutionData.rst
docs/source/api/reference/api/glue_genes.glue_genomics_data.ome_zarr_factory.read_ome_zarr.rst
docs/source/api/reference/api/glue_genes.glue_genomics_data.openslide_factory.read_open_slide_as_zarr.rst
docs/source/api/reference/api/glue_genes.glue_genomics_data.spaceranger_factory.read_spaceranger_directory.rst
docs/source/api/reference/api/glue_genes.glue_genomics_data.tifffile_factory.read_tifffile_as_zarr.rst
docs/source/api/reference/api/glue_genes.glue_single_cell.anndata_factory.read_anndata.rst
docs/source/api/reference/api/glue_genes.glue_single_cell.data.DataAnnData.rst
docs/source/api/reference/api/glue_genes.glue_single_cell.data.DataAnnDataTranslator.rst
docs/source/api/reference/api/glue_genes.glue_single_cell.qt.diff_gene_exp.DifferentialGeneExpressionListener.rst
docs/source/api/reference/api/glue_genes.glue_single_cell.qt.diff_gene_exp.get_gene_diff_exp.rst
docs/source/api/reference/api/glue_genes.glue_single_cell.qt.summarize_gene_subset.GeneSummaryListener.rst
docs/source/api/reference/api/glue_genes.glue_single_cell.qt.summarize_gene_subset.do_calculation_over_gene_subset.rst
docs/source/getting-started/index.rst
docs/source/how-to/cells-to-genes.rst
docs/source/how-to/data-in.rst
docs/source/how-to/index.rst
docs/source/how-to/installation.rst
docs/source/how-to/linking-data.rst
docs/source/how-to/linking-observations-and-images.rst
docs/source/how-to/starting.rst
docs/source/how-to/visualize-data.rst
docs/source/how-to/visualize-expression-matrix.rst
docs/source/how-to/images/connect_choose_plugin.png
docs/source/how-to/images/connect_create_gene_subset.png
docs/source/how-to/images/connect_dge_dialog.png
docs/source/how-to/images/connect_dge_menubar.png
docs/source/how-to/images/connect_summary_dialog.png
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docs/source/how-to/images/heatmap_subsets.png
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docs/source/how-to/images/link_data_join_on_key.png
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docs/source/how-to/images/linking_attributes_step1.png
docs/source/how-to/images/linking_attributes_step2.png
docs/source/how-to/images/linking_image_table_custom.gif
docs/source/how-to/images/loading_options.png
docs/source/how-to/images/open_data_set_icon.png
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docs/source/how-to/images/single_cell_loading_options.png
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docs/source/user-guide/index.rst
docs/source/user-guide/images/enrichr.png
docs/source/user-guide/images/heatmap_viewer.png
docs/source/user-guide/images/qtl_viewer.png
docs/source/user-guide/images/single_cell_schematic.png
docs/source/user-guide/images/small_multiples_viewer.png
glue_genes/__init__.py
glue_genes.egg-info/PKG-INFO
glue_genes.egg-info/SOURCES.txt
glue_genes.egg-info/dependency_links.txt
glue_genes.egg-info/entry_points.txt
glue_genes.egg-info/not-zip-safe
glue_genes.egg-info/requires.txt
glue_genes.egg-info/top_level.txt
glue_genes/glue_genomics_data/__init__.py
glue_genes/glue_genomics_data/bed_factory.py
glue_genes/glue_genomics_data/bigwig_factory.py
glue_genes/glue_genomics_data/geojson_factory.py
glue_genes/glue_genomics_data/image_link_functions.py
glue_genes/glue_genomics_data/multires_data.py
glue_genes/glue_genomics_data/ome_zarr_factory.py
glue_genes/glue_genomics_data/openslide_factory.py
glue_genes/glue_genomics_data/spaceranger_factory.py
glue_genes/glue_genomics_data/tifffile_factory.py
glue_genes/glue_genomics_data/zarr_factory.py
glue_genes/glue_genomics_data/tests/test_multi_resolution_data.py
glue_genes/glue_genomics_data/tests/test_ome_zarr_factory.py
glue_genes/glue_genomics_data/tests/test_spaceranger.py
glue_genes/glue_genomics_data/tests/test_tifffile_factory.py
glue_genes/glue_genomics_data/tests/test_spatial_data/README.txt
glue_genes/glue_genomics_data/tests/test_spatial_data/filtered_feature_bc_matrix.h5
glue_genes/glue_genomics_data/tests/test_spatial_data/ligrec_no_numba.pickle
glue_genes/glue_genomics_data/tests/test_spatial_data/paul15_means.pickle
glue_genes/glue_genomics_data/tests/test_spatial_data/test_data.h5ad
glue_genes/glue_genomics_data/tests/test_spatial_data/test_img.jpg
glue_genes/glue_genomics_data/tests/test_spatial_data/spatial/scalefactors_json.json
glue_genes/glue_genomics_data/tests/test_spatial_data/spatial/tissue_hires_image.png
glue_genes/glue_genomics_data/tests/test_spatial_data/spatial/tissue_lowres_image.png
glue_genes/glue_genomics_data/tests/test_spatial_data/spatial/tissue_positions_list.csv
glue_genes/glue_single_cell/__init__.py
glue_genes/glue_single_cell/anndata_factory.py
glue_genes/glue_single_cell/component.py
glue_genes/glue_single_cell/data.py
glue_genes/glue_single_cell/menubar_plugin.py
glue_genes/glue_single_cell/state.py
glue_genes/glue_single_cell/qt/__init__.py
glue_genes/glue_single_cell/qt/diff_gene_exp.py
glue_genes/glue_single_cell/qt/diff_gene_exp.ui
glue_genes/glue_single_cell/qt/enrichr.py
glue_genes/glue_single_cell/qt/enrichr.ui
glue_genes/glue_single_cell/qt/load_data.py
glue_genes/glue_single_cell/qt/load_data.ui
glue_genes/glue_single_cell/qt/summarize_gene_subset.py
glue_genes/glue_single_cell/qt/summarize_gene_subset.ui
glue_genes/glue_single_cell/qt/tests/__init__.py
glue_genes/glue_single_cell/qt/tests/test_data_load.py
glue_genes/glue_single_cell/qt/tests/test_diff_gene_exp.py
glue_genes/glue_single_cell/qt/tests/test_enrichr.py
glue_genes/glue_single_cell/qt/tests/test_summarize_gene_subset.py
glue_genes/glue_single_cell/qt/tests/data/__init__.py
glue_genes/glue_single_cell/qt/tests/data/test_data.h5ad
glue_genes/glue_single_cell/qt/tests/data/test_data_compressed.h5ad
glue_genes/glue_single_cell/qt/tests/data/test_data_dense.h5ad
glue_genes/glue_single_cell/qt/tests/data/test_data_dense_compressed.h5ad
glue_genes/glue_single_cell/qt/tests/data/test_other_data.h5ad
glue_genes/glue_single_cell/qtl_viewer/__init__.py
glue_genes/glue_single_cell/qtl_viewer/layer_artist.py
glue_genes/glue_single_cell/qtl_viewer/state.py
glue_genes/glue_single_cell/qtl_viewer/viewer.py
glue_genes/glue_single_cell/qtl_viewer/qt/__init__.py
glue_genes/glue_single_cell/qtl_viewer/qt/layer_style_editor.py
glue_genes/glue_single_cell/qtl_viewer/qt/layer_style_editor.ui
glue_genes/glue_single_cell/qtl_viewer/qt/options_widget.py
glue_genes/glue_single_cell/qtl_viewer/qt/options_widget.ui
glue_genes/glue_single_cell/qtl_viewer/qt/slider_with_label_widget.ui
glue_genes/glue_single_cell/qtl_viewer/tests/__init__.py
glue_genes/glue_single_cell/qtl_viewer/tests/test_qtl_data_viewer.py
glue_genes/glue_single_cell/tests/context.py
glue_genes/glue_single_cell/tests/test_data_math.py
glue_genes/glue_single_cell/tests/test_synccomponent.py
glue_genes/glue_single_cell/tests/test_data/__init__.py
glue_genes/glue_single_cell/tests/test_data/test_data.h5ad
glue_genes/glue_single_cell/tests/test_data/test_dataset.h5ad
glue_genes/glue_single_cell/tests/test_data/test_dataset_float32.h5ad