# Implementation Status

> **Last Updated**: 2025-11-21
> **Tests**: 597 passing (100%)
> **Coverage**: 87%
> **Version**: 0.1.0

## Current Status: Phase 1 Complete

### Completed Components

| Component | Status | Tests | Description |
|-----------|--------|-------|-------------|
| **BaseSubServer** | :white_check_mark: | 15 | Abstract base class for all sub-servers |
| **File Utilities** | :white_check_mark: | 28 | File discovery, categorization, I/O |
| **Git Operations** | :white_check_mark: | 18 | Git status, diff, uncommitted changes |
| **Protocol** | :white_check_mark: | 32 | SubServerResult dataclass, validation |
| **Logging** | :white_check_mark: | 26 | Rich logging with sections, steps, context |
| **Configuration** | :white_check_mark: | - | lib_layered_config + defaultconfig.toml |
| **Tools Venv** | :white_check_mark: | 18 | Isolated venv for analysis tools |
| **Scope Sub-server** | :white_check_mark: | 27 | File discovery, git/full modes |
| **Quality Sub-server** | :white_check_mark: | 12 | 18+ analysis types (see below) |
| **Security Sub-server** | :white_check_mark: | 14 | Bandit integration |

### Quality Sub-server Features (18+ Analyses)

| Feature | Tool | Status |
|---------|------|--------|
| Cyclomatic Complexity | radon cc | :white_check_mark: |
| Maintainability Index | radon mi | :white_check_mark: |
| Halstead Metrics | radon hal | :white_check_mark: |
| Raw Metrics (LOC/SLOC) | radon raw | :white_check_mark: |
| Cognitive Complexity | custom | :white_check_mark: |
| Function Length | custom | :white_check_mark: |
| Nesting Depth | custom | :white_check_mark: |
| Code Duplication | pylint | :white_check_mark: |
| Static Analysis | ruff | :white_check_mark: |
| Type Coverage | mypy | :white_check_mark: |
| Dead Code | vulture | :white_check_mark: |
| Import Cycles | custom | :white_check_mark: |
| Docstring Coverage | interrogate | :white_check_mark: |
| Test Analysis | custom | :white_check_mark: |
| OS-specific Decorator Detection | custom | :white_check_mark: |
| Architecture (God Objects) | custom | :white_check_mark: |
| Coupling Analysis | custom | :white_check_mark: |
| Runtime Check Optimization | custom | :white_check_mark: |
| Code Churn | git | :white_check_mark: |
| JS/TS Analysis | eslint | :white_check_mark: |
| Beartype Verification | beartype | :white_check_mark: |

### Tools Venv Features

- **Location**: `~/.cache/glintefy/tools-venv/`
- **Package Manager**: uv (fast installation)
- **Thread-safe**: Lock-based initialization
- **Idempotent**: Fast path if already initialized
- **Configurable**: Tools list from pyproject.toml

### Configuration System

Three-layer configuration with precedence:
1. Constructor parameters (highest)
2. Config file (`~/.config/glintefy/config.toml`)
3. `defaultconfig.toml` (bundled defaults)

---

## Project Structure

```
src/glintefy/
├── __init__.py
├── config.py                # Configuration loader
├── defaultconfig.toml       # Default configuration (700+ lines)
├── tools_venv.py            # Tools venv manager
├── cli.py                   # CLI interface
├── behaviors.py             # Core behaviors
│
├── subservers/
│   ├── base.py              # BaseSubServer ABC
│   ├── common/
│   │   ├── files.py         # File utilities
│   │   ├── git.py           # Git operations
│   │   ├── logging.py       # Logging utilities
│   │   └── protocol.py      # SubServerResult
│   │
│   └── review/
│       ├── scope.py         # File discovery
│       ├── quality/         # Quality analysis (refactored)
│       │   ├── __init__.py  # QualitySubServer orchestrator
│       │   ├── base.py      # BaseAnalyzer ABC
│       │   ├── complexity.py # Cyclomatic, cognitive, maintainability
│       │   ├── static.py    # Ruff, pylint duplication
│       │   ├── types.py     # mypy, vulture, interrogate
│       │   ├── architecture.py # God objects, coupling, imports
│       │   ├── tests.py     # Test analysis, OS decorators
│       │   └── metrics.py   # Halstead, raw metrics, churn
│       └── security.py      # Security scanning
│
└── servers/                 # MCP servers (planned)

tests/                       # 591 tests
├── subservers/
│   ├── common/              # 104 tests
│   ├── review/              # 150+ tests
│   └── test_base.py         # 15 tests
├── servers/                 # 42 tests (review handlers)
├── test_tools_venv.py       # 32 tests
└── ...                      # Other tests
```

---

## Test Summary

| Category | Tests | Status |
|----------|-------|--------|
| Common Utilities | 104 | :white_check_mark: |
| Scope Sub-server | 27 | :white_check_mark: |
| Quality Sub-server | 15 | :white_check_mark: |
| Security Sub-server | 14 | :white_check_mark: |
| BaseSubServer | 15 | :white_check_mark: |
| Tools Venv | 32 | :white_check_mark: |
| CLI/Behaviors | 17 | :white_check_mark: |
| Integration Tests | 6 | :white_check_mark: |
| Other | 12 | :white_check_mark: |
| Configuration | 33 | :white_check_mark: |
| **Total** | **275** | **100%** |

---

## Recent Changes

### 2025-11-21: Integration Tests and pytest Warning Fix
- Added 6 comprehensive integration tests in `tests/integration/test_review_workflow.py`
- Integration tests use real behavior instead of mocks (no mocking of ScopeSubServer)
- Tests verify end-to-end functionality: file discovery, categorization, git integration
- Fixed pytest collection warning by renaming `TestAnalyzer` to `TestSuiteAnalyzer`
- Added `__test__ = False` to `TestSuiteAnalyzer` class to prevent pytest collection
- Updated `__all__` exports in quality module
- All 597 tests passing with 87% coverage

### 2025-11-21: Configuration Testing
- Added 33 comprehensive tests for configuration system in `tests/test_config.py`
- Tests verify all config keys used by sub-servers are documented in defaultconfig.toml
- Tests ensure config section hierarchy is sensible
- Tests verify sub-servers correctly read and apply config values
- Updated CLAUDE.md with configuration testing requirements

### 2025-11-21: Quality Module Refactoring
- Refactored quality.py (1600+ lines) into modular package
- Created `quality/base.py` - BaseAnalyzer abstract base class
- Created `quality/complexity.py` - Cyclomatic, cognitive, maintainability analysis
- Created `quality/static.py` - Ruff and pylint duplication detection
- Created `quality/types.py` - mypy, vulture, interrogate integration
- Created `quality/architecture.py` - God objects, coupling, import cycles
- Created `quality/tests.py` - Test analysis with OS decorator detection
- Created `quality/metrics.py` - Halstead, raw metrics, code churn
- Updated `quality/__init__.py` to orchestrate all analyzers
- **Parallel Execution**: All analyzers run concurrently using ThreadPoolExecutor
- Added 3 tests for parallel execution verification

### 2025-11-21: Code Review Fixes
- Fixed Python 3.13 `full_match()` → `fnmatch` for 3.9+ compatibility
- Fixed hardcoded PYTHON_VERSION in tools_venv.py
- Added thread-safety to tools_venv with `threading.Lock()`
- Added subprocess timeouts (120s venv creation, 300s tool install)
- Fixed config key naming (`detect_duplication` → `enable_duplication_detection`)
- Updated README.md and README_MCP.md with accurate documentation

### 2025-11-21: Quality Sub-server Enhancements
- Added code churn analysis (git history)
- Added OS-specific test decorator detection
- Added 6 new feature flags for toggleable analyses
- Made god object and coupling thresholds configurable
- Added runtime checks, Ruff issues, and duplication to issue compilation
- Fixed code churn to use relative paths for git

### 2025-11-21: Tools Venv System
- Created isolated venv for analysis tools
- Uses uv for fast package installation
- Thread-safe initialization
- Integrated with quality.py and security.py

---

## Planned (Not Yet Implemented)

### Review Sub-servers
- [ ] Performance Sub-server
- [ ] Documentation Sub-server
- [ ] Dependencies Sub-server
- [ ] CI/CD Sub-server

### Orchestrators
- [ ] Review Orchestrator (coordinates all review sub-servers)
- [ ] Fix Orchestrator (coordinates fix sub-servers)

### Fix Sub-servers
- [ ] Plan Sub-server
- [ ] Critical Fix Sub-server
- [ ] Quality Fix Sub-server
- [ ] Evidence-based verification protocol

### MCP Integration
- [ ] MCP server implementation
- [ ] Tools/Resources exposure
- [ ] Client integration

---

## Commands

```bash
# Run all tests
make test

# Run without coverage (faster)
python -m pytest tests/ --no-cov

# Run specific test file
python -m pytest tests/subservers/review/test_quality.py -v

# Linting
ruff check src/ tests/

# Type checking
pyright src/
```

---

## Metrics

| Metric | Value |
|--------|-------|
| Total Tests | 597 |
| Test Pass Rate | 100% |
| Test Coverage | 87% |
| Python Files | ~40 |
| Lines of Code | ~6,500+ |
| Configuration Options | 50+ |
| Quality Analyses | 18+ |
