COPYRIGHT
LICENSE
MANIFEST.in
README.md
requirements.txt
setup.cfg
setup.py
gillespy2/__init__.py
gillespy2/__version__.py
gillespy2.egg-info/PKG-INFO
gillespy2.egg-info/SOURCES.txt
gillespy2.egg-info/dependency_links.txt
gillespy2.egg-info/requires.txt
gillespy2.egg-info/top_level.txt
gillespy2/core/__init__.py
gillespy2/core/assignmentrule.py
gillespy2/core/events.py
gillespy2/core/functiondefinition.py
gillespy2/core/gillespyError.py
gillespy2/core/gillespySolver.py
gillespy2/core/jsonify.py
gillespy2/core/liveGraphing.py
gillespy2/core/model.py
gillespy2/core/parameter.py
gillespy2/core/raterule.py
gillespy2/core/reaction.py
gillespy2/core/results.py
gillespy2/core/sortableobject.py
gillespy2/core/species.py
gillespy2/sbml/SBMLexport.py
gillespy2/sbml/SBMLimport.py
gillespy2/sbml/__init__.py
gillespy2/solvers/__init__.py
gillespy2/solvers/cpp/__init__.py
gillespy2/solvers/cpp/c_decoder.py
gillespy2/solvers/cpp/c_solver.py
gillespy2/solvers/cpp/example_models.py
gillespy2/solvers/cpp/ode_c_solver.py
gillespy2/solvers/cpp/ssa_c_solver.py
gillespy2/solvers/cpp/tau_hybrid_c_solver.py
gillespy2/solvers/cpp/tau_leaping_c_solver.py
gillespy2/solvers/cpp/variable_ssa_c_solver.py
gillespy2/solvers/cpp/build/__init__.py
gillespy2/solvers/cpp/build/build_engine.py
gillespy2/solvers/cpp/build/expression.py
gillespy2/solvers/cpp/build/make.py
gillespy2/solvers/cpp/build/template_gen.py
gillespy2/solvers/cpp/c_base/.env.ps1
gillespy2/solvers/cpp/c_base/Makefile
gillespy2/solvers/cpp/c_base/arg_parser.cpp
gillespy2/solvers/cpp/c_base/arg_parser.h
gillespy2/solvers/cpp/c_base/clean.ps1
gillespy2/solvers/cpp/c_base/model.cpp
gillespy2/solvers/cpp/c_base/model.h
gillespy2/solvers/cpp/c_base/Sundials/LICENSE
gillespy2/solvers/cpp/c_base/Sundials/NOTICE
gillespy2/solvers/cpp/c_base/Sundials/README.md
gillespy2/solvers/cpp/c_base/Sundials/include/cvode.h
gillespy2/solvers/cpp/c_base/Sundials/include/cvode_ls.h
gillespy2/solvers/cpp/c_base/Sundials/include/cvode_proj.h
gillespy2/solvers/cpp/c_base/Sundials/include/cvode_spils.h
gillespy2/solvers/cpp/c_base/Sundials/include/nvector_serial.h
gillespy2/solvers/cpp/c_base/Sundials/include/sundials_band.h
gillespy2/solvers/cpp/c_base/Sundials/include/sundials_config.h
gillespy2/solvers/cpp/c_base/Sundials/include/sundials_direct.h
gillespy2/solvers/cpp/c_base/Sundials/include/sundials_iterative.h
gillespy2/solvers/cpp/c_base/Sundials/include/sundials_linearsolver.h
gillespy2/solvers/cpp/c_base/Sundials/include/sundials_math.h
gillespy2/solvers/cpp/c_base/Sundials/include/sundials_matrix.h
gillespy2/solvers/cpp/c_base/Sundials/include/sundials_nonlinearsolver.h
gillespy2/solvers/cpp/c_base/Sundials/include/sundials_nvector.h
gillespy2/solvers/cpp/c_base/Sundials/include/sundials_nvector_senswrapper.h
gillespy2/solvers/cpp/c_base/Sundials/include/sundials_types.h
gillespy2/solvers/cpp/c_base/Sundials/include/sundials_version.h
gillespy2/solvers/cpp/c_base/Sundials/include/sunlinsol_spgmr.h
gillespy2/solvers/cpp/c_base/Sundials/include/sunmatrix_band.h
gillespy2/solvers/cpp/c_base/Sundials/include/sunmatrix_dense.h
gillespy2/solvers/cpp/c_base/Sundials/include/sunmatrix_sparse.h
gillespy2/solvers/cpp/c_base/Sundials/include/sunnonlinsol_newton.h
gillespy2/solvers/cpp/c_base/Sundials/src/cvode.c
gillespy2/solvers/cpp/c_base/Sundials/src/cvode_direct.c
gillespy2/solvers/cpp/c_base/Sundials/src/cvode_fused_stubs.c
gillespy2/solvers/cpp/c_base/Sundials/src/cvode_impl.h
gillespy2/solvers/cpp/c_base/Sundials/src/cvode_io.c
gillespy2/solvers/cpp/c_base/Sundials/src/cvode_ls.c
gillespy2/solvers/cpp/c_base/Sundials/src/cvode_ls_impl.h
gillespy2/solvers/cpp/c_base/Sundials/src/cvode_nls.c
gillespy2/solvers/cpp/c_base/Sundials/src/cvode_proj.c
gillespy2/solvers/cpp/c_base/Sundials/src/cvode_proj_impl.h
gillespy2/solvers/cpp/c_base/Sundials/src/cvode_spils.c
gillespy2/solvers/cpp/c_base/Sundials/src/nvector_serial.c
gillespy2/solvers/cpp/c_base/Sundials/src/sundials_band.c
gillespy2/solvers/cpp/c_base/Sundials/src/sundials_debug.h
gillespy2/solvers/cpp/c_base/Sundials/src/sundials_iterative.c
gillespy2/solvers/cpp/c_base/Sundials/src/sundials_linearsolver.c
gillespy2/solvers/cpp/c_base/Sundials/src/sundials_math.c
gillespy2/solvers/cpp/c_base/Sundials/src/sundials_matrix.c
gillespy2/solvers/cpp/c_base/Sundials/src/sundials_nonlinearsolver.c
gillespy2/solvers/cpp/c_base/Sundials/src/sundials_nvector.c
gillespy2/solvers/cpp/c_base/Sundials/src/sundials_nvector_senswrapper.c
gillespy2/solvers/cpp/c_base/Sundials/src/sunlinsol_band.c
gillespy2/solvers/cpp/c_base/Sundials/src/sunlinsol_dense.c
gillespy2/solvers/cpp/c_base/Sundials/src/sunlinsol_spgmr.c
gillespy2/solvers/cpp/c_base/Sundials/src/sunmatrix_band.c
gillespy2/solvers/cpp/c_base/Sundials/src/sunmatrix_dense.c
gillespy2/solvers/cpp/c_base/Sundials/src/sunnonlinsol_fixedpoint.c
gillespy2/solvers/cpp/c_base/Sundials/src/sunnonlinsol_newton.c
gillespy2/solvers/cpp/c_base/Tau/tau.cpp
gillespy2/solvers/cpp/c_base/Tau/tau.h
gillespy2/solvers/cpp/c_base/ode_cpp_solver/ODESimulation.cpp
gillespy2/solvers/cpp/c_base/ode_cpp_solver/ODESolver.cpp
gillespy2/solvers/cpp/c_base/ode_cpp_solver/ODESolver.h
gillespy2/solvers/cpp/c_base/ssa_cpp_solver/SSASimulation.cpp
gillespy2/solvers/cpp/c_base/ssa_cpp_solver/SSASolver.cpp
gillespy2/solvers/cpp/c_base/ssa_cpp_solver/SSASolver.h
gillespy2/solvers/cpp/c_base/tau_hybrid_cpp_solver/HybridModel.cpp
gillespy2/solvers/cpp/c_base/tau_hybrid_cpp_solver/HybridModel.h
gillespy2/solvers/cpp/c_base/tau_hybrid_cpp_solver/TauHybridSimulation.cpp
gillespy2/solvers/cpp/c_base/tau_hybrid_cpp_solver/TauHybridSolver.cpp
gillespy2/solvers/cpp/c_base/tau_hybrid_cpp_solver/TauHybridSolver.h
gillespy2/solvers/cpp/c_base/tau_hybrid_cpp_solver/hybrid_template.cpp
gillespy2/solvers/cpp/c_base/tau_hybrid_cpp_solver/hybrid_template.h
gillespy2/solvers/cpp/c_base/tau_hybrid_cpp_solver/integrator.cpp
gillespy2/solvers/cpp/c_base/tau_hybrid_cpp_solver/integrator.h
gillespy2/solvers/cpp/c_base/tau_leaping_cpp_solver/TauLeapingSimulation.cpp
gillespy2/solvers/cpp/c_base/tau_leaping_cpp_solver/TauLeapingSolver.cpp
gillespy2/solvers/cpp/c_base/tau_leaping_cpp_solver/TauLeapingSolver.h
gillespy2/solvers/cpp/c_base/template/template.cpp
gillespy2/solvers/cpp/c_base/template/template.h
gillespy2/solvers/cpp/c_base/template/template_defaults.h
gillespy2/solvers/cpp/c_base/template/template_definitions.h
gillespy2/solvers/cpp/c_base/template/template_opts.h
gillespy2/solvers/cpp/c_base/template/template_params.h
gillespy2/solvers/cython/__init__.py
gillespy2/solvers/numpy/CLE_solver.py
gillespy2/solvers/numpy/__init__.py
gillespy2/solvers/numpy/basic_ode_solver.py
gillespy2/solvers/numpy/basic_tau_hybrid_solver.py
gillespy2/solvers/numpy/basic_tau_leaping_solver.py
gillespy2/solvers/numpy/ode_solver.py
gillespy2/solvers/numpy/ssa_solver.py
gillespy2/solvers/numpy/tau_hybrid_solver.py
gillespy2/solvers/numpy/tau_leaping_solver.py
gillespy2/solvers/stochkit/__init__.py
gillespy2/solvers/stochkit/stochkit_solvers.py
gillespy2/solvers/utilities/Tau.py
gillespy2/solvers/utilities/__init__.py
gillespy2/solvers/utilities/cpp_support_test.py
gillespy2/solvers/utilities/solverutils.py
gillespy2/stochss/StochSSexport.py
gillespy2/stochss/__init__.py
test/test_SBML.py
test/test_StochML.py
test/test_all_solvers.py
test/test_basic_tau_leaping_solver.py
test/test_build_engine.py
test/test_c_decode.py
test/test_c_solver_perf.py
test/test_c_solvers.py
test/test_check_cpp_support.py
test/test_empty_model.py
test/test_example_models.py
test/test_hybrid_solver.py
test/test_jsonify.py
test/test_model.py
test/test_notebooks.py
test/test_numpy_ssa_solver.py
test/test_ode_c_solver.py
test/test_ode_solver.py
test/test_pause_resume.py
test/test_propensity_parser.py
test/test_python_solver_perf.py
test/test_results.py
test/test_simple_model.py
test/test_ssa_c_solver.py
test/test_sys_init.py
test/test_tau_hybrid_c_solver.py
test/test_tau_leaping_c_solver.py
test/test_tau_leaping_solver.py
test/test_variable_solvers.py