LICENSE
MANIFEST.in
README.md
pyproject.toml
benchmarks/benchmark_diff_tool.py
benchmarks/bioid_evaluation.py
benchmarks/bioid_f1_breakdown.py
benchmarks/bioid_ner_benchmark.py
benchmarks/bioid_responsiveness_benchmark.py
benchmarks/fplx_evaluation.py
benchmarks/medmentions.py
benchmarks/medmentions_responsiveness_benchmark.py
benchmarks/pubtator/pubtator_benchmark.py
doc/Makefile
doc/conf.py
doc/index.rst
doc/make.bat
doc/requirements.txt
doc/modules/index.rst
gilda/__init__.py
gilda/api.py
gilda/generate_terms.py
gilda/greek_alphabet.py
gilda/grounder.py
gilda/ner.py
gilda/pandas_utils.py
gilda/process.py
gilda/scorer.py
gilda/term.py
gilda.egg-info/PKG-INFO
gilda.egg-info/SOURCES.txt
gilda.egg-info/dependency_links.txt
gilda.egg-info/entry_points.txt
gilda.egg-info/requires.txt
gilda.egg-info/top_level.txt
gilda/app/__init__.py
gilda/app/__main__.py
gilda/app/app.py
gilda/app/proxies.py
gilda/app/ui.py
gilda/app/templates/base.html
gilda/app/templates/home.html
gilda/app/templates/matches.html
gilda/app/templates/ner_home.html
gilda/app/templates/ner_matches.html
gilda/resources/__init__.py
gilda/resources/__main__.py
gilda/resources/mesh_ambig_mappings.tsv
gilda/resources/mesh_mappings.tsv
gilda/resources/ner_stoplist.txt
gilda/resources/sqlite_adapter.py
gilda/tests/__init__.py
gilda/tests/test_api.py
gilda/tests/test_app.py
gilda/tests/test_generate_terms.py
gilda/tests/test_grounder.py
gilda/tests/test_ner.py
gilda/tests/test_pandas_utils.py
gilda/tests/test_process.py
gilda/tests/test_scorer.py
gilda/tests/test_term.py
models/find_ambiguities.py
models/learn.py
models/plot_model_f1.py
scripts/generate_mesh_mappings.py
scripts/generate_uniprot_chain_proonto_mappings.py
scripts/git_patch_process.py
scripts/grounding_cell_designer.py