CHANGELOG.md
LICENSE
MANIFEST.in
README.md
README.rst
requirements.txt
setup.py
dev/cython_csg_gias2.pyx
src/gias2/__init__.py
src/gias2/version.py
src/gias2.egg-info/PKG-INFO
src/gias2.egg-info/SOURCES.txt
src/gias2.egg-info/dependency_links.txt
src/gias2.egg-info/entry_points.txt
src/gias2.egg-info/requires.txt
src/gias2.egg-info/top_level.txt
src/gias2/applications/__init__.py
src/gias2/applications/giashmfinp2surf.py
src/gias2/applications/giasinpsampledicom.py
src/gias2/applications/giaspcreg.py
src/gias2/applications/giasrbfreg.py
src/gias2/applications/giasrigidreg.py
src/gias2/applications/giassurfacedistance.py
src/gias2/applications/giastrainpcashapemodel.py
src/gias2/common/__init__.py
src/gias2/common/geoprimitives.py
src/gias2/common/math.py
src/gias2/common/misc.py
src/gias2/common/tabledata.py
src/gias2/common/transform3D.py
src/gias2/examples/ASM_profile_matching.py
src/gias2/examples/HRV.py
src/gias2/examples/HRV_single_image_params_test.py
src/gias2/examples/STL_nearest_distance.py
src/gias2/examples/__init__.py
src/gias2/examples/csgcup.py
src/gias2/examples/giasrbfreg_config.ini
src/gias2/examples/hmf_inp_2_surf.py
src/gias2/examples/hmf_mat_map_inp.py
src/gias2/examples/inp_read_write.py
src/gias2/examples/inp_sample_dicom.py
src/gias2/examples/inp_sample_dicom_params.ini
src/gias2/examples/integral_image_cython.py
src/gias2/examples/modelio.py
src/gias2/examples/surface_to_surface_distance.py
src/gias2/examples/tetgen_meshes.py
src/gias2/examples/view_fieldwork_model_elements.py
src/gias2/examples/view_fieldwork_model_elements_script.py
src/gias2/examples/view_fieldwork_pca.py
src/gias2/examples/vtk_read_write.py
src/gias2/examples/data/2008_1741_tibia_fibula.wrl
src/gias2/examples/data/BN00104_E14727_S01_mc1 4_001.wrl
src/gias2/examples/data/autoCarpal1_outer.stl
src/gias2/examples/data/hip_test_image.npy
src/gias2/examples/data/manualCarpal1.stl
src/gias2/examples/data/prox_femur.inp
src/gias2/examples/data/prox_femur_out.inp
src/gias2/examples/data/tibia_left.ens
src/gias2/examples/data/tibia_left.geof
src/gias2/examples/data/tibia_left.mesh
src/gias2/examples/data/tibia_morphed.stl
src/gias2/examples/data/tibia_surface.stl
src/gias2/examples/data/tibia_volume.inp
src/gias2/examples/data/femur_pca/femur_left_mean_rigid_LLP26.geof
src/gias2/examples/data/femur_pca/femur_left_quartic_flat.ens
src/gias2/examples/data/femur_pca/femur_left_quartic_flat.mesh
src/gias2/examples/data/femur_pca/femur_left_rigid_LLP26.pc
src/gias2/examples/data/femur_pca/femur_left_rigid_LLP26_scans.txt
src/gias2/examples/data/tetgen_mesh/femur_interior.1.edge
src/gias2/examples/data/tetgen_mesh/femur_interior.1.ele
src/gias2/examples/data/tetgen_mesh/femur_interior.1.face
src/gias2/examples/data/tetgen_mesh/femur_interior.1.node
src/gias2/examples/data/tetgen_mesh/femur_interior.1.smesh
src/gias2/examples/fieldwork/__init__.py
src/gias2/examples/fieldwork/build_2d_mesh.py
src/gias2/examples/fieldwork/fit_whole_pelvis.py
src/gias2/examples/fieldwork/host_mesh_fit_data.py
src/gias2/examples/fieldwork/host_mesh_fit_surface_data.py
src/gias2/examples/fieldwork/normalsmoother.py
src/gias2/examples/fieldwork/quartic_element_fitting.py
src/gias2/examples/fieldwork/quartic_elements.py
src/gias2/examples/fieldwork/remove_elements.py
src/gias2/examples/fieldwork/data/BN00104_E14727_S01_mc1 4_001.wrl
src/gias2/examples/fieldwork/data/BN00105_E15006_S01_mc1 8_001.wrl
src/gias2/examples/fieldwork/data/BN00105_E15006_S01_tpm 7_001.wrl
src/gias2/examples/fieldwork/data/BN00105_E15006_S01_tpm 7_001_deci.1.node
src/gias2/examples/fieldwork/data/BN00105_E15006_S01_tpm 7_001_deci.stl
src/gias2/examples/fieldwork/data/BN00105_E15006_S01_tpm 7_001_deci.xyz
src/gias2/examples/fieldwork/data/test_mesh_1.0.ens
src/gias2/examples/fieldwork/data/test_mesh_1.0.geof
src/gias2/examples/fieldwork/data/test_mesh_1.0.mesh
src/gias2/examples/fieldwork/fit_whole_pelvis_data/2007_5028_short_closedsacrum.wrl
src/gias2/examples/fieldwork/fit_whole_pelvis_data/LH_params.py
src/gias2/examples/fieldwork/fit_whole_pelvis_data/RH_params.py
src/gias2/examples/fieldwork/fit_whole_pelvis_data/left_hemi_cubic.ens
src/gias2/examples/fieldwork/fit_whole_pelvis_data/left_hemi_cubic.geof
src/gias2/examples/fieldwork/fit_whole_pelvis_data/left_hemi_cubic.mesh
src/gias2/examples/fieldwork/fit_whole_pelvis_data/right_hemi_cubic.ens
src/gias2/examples/fieldwork/fit_whole_pelvis_data/right_hemi_cubic.geof
src/gias2/examples/fieldwork/fit_whole_pelvis_data/right_hemi_cubic.mesh
src/gias2/examples/fieldwork/fit_whole_pelvis_data/sac_params.py
src/gias2/examples/fieldwork/fit_whole_pelvis_data/sacrum_cubic.ens
src/gias2/examples/fieldwork/fit_whole_pelvis_data/sacrum_cubic.geof
src/gias2/examples/fieldwork/fit_whole_pelvis_data/sacrum_cubic.mesh
src/gias2/examples/outputs/readme.md
src/gias2/fieldwork/__init__.py
src/gias2/fieldwork/field/__init__.py
src/gias2/fieldwork/field/ensemble_field_function.py
src/gias2/fieldwork/field/geometric_field.py
src/gias2/fieldwork/field/geometric_field_fitter.py
src/gias2/fieldwork/field/mapper.py
src/gias2/fieldwork/field/scalar_field.py
src/gias2/fieldwork/field/template_fields.py
src/gias2/fieldwork/field/template_fields_simplex_cubic.py
src/gias2/fieldwork/field/basis/__init__.py
src/gias2/fieldwork/field/basis/basis.py
src/gias2/fieldwork/field/field_ctypes/__init__.py
src/gias2/fieldwork/field/field_ctypes/ensemble_evaluators.py
src/gias2/fieldwork/field/tools/__init__.py
src/gias2/fieldwork/field/tools/curvature_tools.py
src/gias2/fieldwork/field/tools/discretisation.py
src/gias2/fieldwork/field/tools/fieldworkbin2json.py
src/gias2/fieldwork/field/tools/fitting_tools.py
src/gias2/fieldwork/field/tools/mesh_fitter.py
src/gias2/fieldwork/field/tools/misc.py
src/gias2/fieldwork/field/tools/spline_tools.py
src/gias2/fieldwork/field/tools/triangulate.py
src/gias2/fieldwork/field/topology/__init__.py
src/gias2/fieldwork/field/topology/element_types.py
src/gias2/fieldwork/field/topology/mesh.py
src/gias2/fieldwork/interactive/__init__.py
src/gias2/fieldwork/interactive/geometric_field_interactor.py
src/gias2/fieldwork/interactive/mesh_builder.py
src/gias2/fieldwork/interactive/point_picker_test.py
src/gias2/image_analysis/__init__.py
src/gias2/image_analysis/asm_search.py
src/gias2/image_analysis/asm_search_c.c
src/gias2/image_analysis/asm_search_c.pyx
src/gias2/image_analysis/asm_segmentation.py
src/gias2/image_analysis/clm_segmentation.py
src/gias2/image_analysis/clm_segmentation_param.py
src/gias2/image_analysis/dicom_series.py
src/gias2/image_analysis/fw_segmentation_tools.py
src/gias2/image_analysis/haar.py
src/gias2/image_analysis/haarregressionvoting.py
src/gias2/image_analysis/image_tools.py
src/gias2/image_analysis/integralimage.py
src/gias2/image_analysis/integralimagec.c
src/gias2/image_analysis/integralimagec.pyx
src/gias2/image_analysis/integralimagetest.py
src/gias2/image_analysis/setupIIC.py
src/gias2/io/__init__.py
src/gias2/io/cmissio.py
src/gias2/learning/PCA.py
src/gias2/learning/PCA_fitting.py
src/gias2/learning/__init__.py
src/gias2/learning/kernelregression.py
src/gias2/learning/ols.py
src/gias2/mappluginutils/__init__.py
src/gias2/mappluginutils/configtools/__init__.py
src/gias2/mappluginutils/configtools/validators.py
src/gias2/mappluginutils/datatypes/__init__.py
src/gias2/mappluginutils/datatypes/transformations.py
src/gias2/mappluginutils/mayaviviewer/__init__.py
src/gias2/mappluginutils/mayaviviewer/mayaviscenewidget.py
src/gias2/mappluginutils/mayaviviewer/mayaviviewerdatapoints.py
src/gias2/mappluginutils/mayaviviewer/mayaviviewerfieldworkmeasurements.py
src/gias2/mappluginutils/mayaviviewer/mayaviviewerfieldworkmodel.py
src/gias2/mappluginutils/mayaviviewer/mayaviviewergiasscan.py
src/gias2/mappluginutils/mayaviviewer/mayaviviewerimageplane.py
src/gias2/mappluginutils/mayaviviewer/mayaviviewerlandmark.py
src/gias2/mappluginutils/mayaviviewer/mayaviviewerobjects.py
src/gias2/mesh/__init__.py
src/gias2/mesh/csgtools.py
src/gias2/mesh/cython_csg.pyx
src/gias2/mesh/inp.py
src/gias2/mesh/plywriter.py
src/gias2/mesh/simplemesh.py
src/gias2/mesh/smutils.py
src/gias2/mesh/tetgenoutput.py
src/gias2/mesh/vtkPolydataReader.py
src/gias2/mesh/vtktools.py
src/gias2/musculoskeletal/__init__.py
src/gias2/musculoskeletal/fw_femur_measurements.py
src/gias2/musculoskeletal/fw_femur_model_data.py
src/gias2/musculoskeletal/fw_model_landmarks.py
src/gias2/musculoskeletal/fw_pelvis_measurements.py
src/gias2/musculoskeletal/fw_pelvis_model_data.py
src/gias2/musculoskeletal/mocap_landmark_preprocess.py
src/gias2/musculoskeletal/model_alignment.py
src/gias2/musculoskeletal/model_alignment_multi.py
src/gias2/musculoskeletal/osim.py
src/gias2/musculoskeletal/pelvis_hjc_estimation.py
src/gias2/musculoskeletal/viewfemurmeasurements.py
src/gias2/musculoskeletal/bonemodels/__init__.py
src/gias2/musculoskeletal/bonemodels/bonemodels.py
src/gias2/musculoskeletal/bonemodels/lowerlimbatlas.py
src/gias2/musculoskeletal/bonemodels/lowerlimbatlasfit.py
src/gias2/musculoskeletal/bonemodels/lowerlimbatlasfit2side.py
src/gias2/musculoskeletal/bonemodels/lowerlimbatlasfitscaling.py
src/gias2/musculoskeletal/bonemodels/modelcore.py
src/gias2/registration/RBF.py
src/gias2/registration/__init__.py
src/gias2/registration/alignment_analytic.py
src/gias2/registration/alignment_fitting.py
src/gias2/registration/shapemodel.py
src/gias2/testing/__init__.py
src/gias2/testing/inptest.py
src/gias2/testing/lines.py
src/gias2/visualisation/__init__.py
src/gias2/visualisation/fieldvi.py
src/gias2/visualisation/frameviewer.py
src/gias2/visualisation/vtkRender.py
tests/fieldworktextserialisation/ens_json_rw.py
tests/fieldworktextserialisation/fieldworkbin2json.py
tests/fieldworktextserialisation/geof_json_rw.py
tests/fieldworktextserialisation/mesh_json_rw.py
tests/micro/test_geoprimitive.py
tests/micro/test_smutil.py
tests/micro/test_transform3D.py
venv/Lib/site-packages/Cython/Runtime/refnanny.pyx
venv/Lib/site-packages/Cython/Utility/CConvert.pyx
venv/Lib/site-packages/Cython/Utility/CpdefEnums.pyx
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