from . import bitseq, corr
from .distances import jensen_shannon_divergence, kl_divergence, total_variation_distance
from .exploration import (
    ExplorationState,
    apply_epsilon_greedy,
    apply_epsilon_greedy_vmap,
    create_exploration_schedule,
)
from .ising import get_true_ising_J
from .ising_hbpt_sample import pt_sampler
from .ising_wolf_sample import wolff_sampler
from .masking import mask_logits
from .molecules import (
    QM9_SMALL_BLOCKS,
    QM9_SMALL_FULL_ALPHABET,
)
from .phylogenetic_tree import get_phylo_initialization_args
from .proteins import (
    AMINO_ACIDS,
    NUCLEOTIDES,
    NUCLEOTIDES_FULL_ALPHABET,
    PROTEINS_FULL_ALPHABET,
    SPECIAL_TOKENS,
)
from .rollout import (
    TrajectoryData,
    TransitionData,
    backward_rollout,
    backward_trajectory_log_probs,
    forward_rollout,
    forward_trajectory_log_probs,
    split_traj_to_transitions,
)

__all__ = [
    "bitseq",
    "corr",
    "AMINO_ACIDS",
    "ExplorationState",
    "NUCLEOTIDES",
    "NUCLEOTIDES_FULL_ALPHABET",
    "PROTEINS_FULL_ALPHABET",
    "SPECIAL_TOKENS",
    "TrajectoryData",
    "TransitionData",
    "apply_epsilon_greedy",
    "apply_epsilon_greedy_vmap",
    "backward_rollout",
    "backward_trajectory_log_probs",
    "create_exploration_schedule",
    "forward_rollout",
    "forward_trajectory_log_probs",
    "get_phylo_initialization_args",
    "jensen_shannon_divergence",
    "kl_divergence",
    "mask_logits",
    "split_traj_to_transitions",
    "total_variation_distance",
    "QM9_SMALL_BLOCKS",
    "QM9_SMALL_FULL_ALPHABET",
    "wolff_sampler",
    "pt_sampler",
    "get_true_ising_J",
]
