AUTHORS.rst
CONTRIBUTING.rst
HISTORY.rst
LICENSE
MANIFEST.in
README.rst
TUTORIAL.rst
setup.cfg
setup.py
docs/Makefile
docs/authors.rst
docs/conf.py
docs/contributing.rst
docs/history.rst
docs/index.rst
docs/installation.rst
docs/make.bat
docs/readme.rst
docs/tutorial.rst
docs/_build/html/_static/ajax-loader.gif
docs/_build/html/_static/comment-bright.png
docs/_build/html/_static/comment-close.png
docs/_build/html/_static/comment.png
docs/_build/html/_static/down-pressed.png
docs/_build/html/_static/down.png
docs/_build/html/_static/file.png
docs/_build/html/_static/minus.png
docs/_build/html/_static/plus.png
docs/_build/html/_static/up-pressed.png
docs/_build/html/_static/up.png
gfeat/UTR.py
gfeat/__init__.py
gfeat/gene.py
gfeat/genome.py
gfeat/gfeat.py
gfeat/transcript.py
gfeat/units.py
gfeat/upstreamAUG.py
gfeat/utils.py
gfeat.egg-info/PKG-INFO
gfeat.egg-info/SOURCES.txt
gfeat.egg-info/dependency_links.txt
gfeat.egg-info/not-zip-safe
gfeat.egg-info/requires.txt
gfeat.egg-info/top_level.txt
tests/.DS_Store
tests/__init__.py
tests/test_gfeat.py
tests/UTR/config_UTR.py
tests/UTR/test_FivePrimeUTRSeq_constructor.py
tests/UTR/test_FivePrimeUTRSeq_getitem.py
tests/UTR/test_FivePrimeUTRSeq_len.py
tests/data/49470G_chr22_testing.vcf
tests/data/49470G_chr22_testing.vcf.gz
tests/data/49470G_chr22_testing.vcf.gz.tbi
tests/data/check_pyensemble.gtf
tests/data/check_scoreUTRs.fa
tests/data/check_scoreUTRs.gtf
tests/data/chr22_testing.fa
tests/data/chr22_testing.fa.fai
tests/data/chr22_testing.gtf
tests/data/gencode.v24.annotation_chr22.gtf
tests/data/gencode.v24.annotation_chr22_FivePrimeUTRSeq_testing.gtf
tests/data/gencode.v24.annotation_chr22_FivePrimeUTRSeq_testing_minus-strand.gtf
tests/data/hg38_chr22.fa
tests/data/hg38_chr22.fa.fai
tests/gene/config_1.py
tests/gene/test_coding_sequence_codon_count.py
tests/transcript/config.py
tests/transcript/test_GC_content.py
tests/transcript/test_Kozak.py
tests/transcript/test_codon_counts.py
tests/transcript/test_codon_usage.py
tests/transcript/test_get_codon_pairs_frequency.py
tests/transcript/test_stop_codon_context.py
tests/transcript/test_utr3_motif_counts.py
tests/transcript/test_utr5_motif_counts.py
tests/uATG/config_uATG.py
tests/uATG/test_predict_on_batch.py
tests/uATG/test_predict_on_sample.py
tests/uATG/test_predict_on_sample_with_pos.py
tests/units/test_extract_sequence_BedTool.py
tests/units/test_mutate_sequence_BedTool.py
tests/utils/test_PCA_with_scaling.py