Metadata-Version: 2.1
Name: genotype
Version: 2.5.0
Summary: genotype provides an automated pipipeline for comparinggenotypes from different assays.
Home-page: https://github.com/Clinical-Genomics/genotype
Author: Robin Andeer
Author-email: mans.magnusson@scilifelab.se
License: MIT
Keywords: genotype development
Platform: UNKNOWN
Classifier: Development Status :: 3 - Alpha
Classifier: Intended Audience :: Developers
Classifier: Topic :: Software Development
Classifier: License :: OSI Approved :: MIT License
Classifier: Programming Language :: Python :: 3.6
Classifier: Environment :: Console
Description-Content-Type: text/markdown
Requires-Dist: cython
Requires-Dist: Alchy
Requires-Dist: SQLAlchemy
Requires-Dist: pymysql
Requires-Dist: cyvcf2 (<0.10.0)
Requires-Dist: xlrd
Requires-Dist: pysam (==0.15.2)
Requires-Dist: pyyaml
Requires-Dist: Flask (>=1.1.1)
Requires-Dist: Flask-Bootstrap
Requires-Dist: Flask-Reverse-Proxy
Requires-Dist: Flask-SQLAlchemy (==2.1)
Requires-Dist: Flask-Alchy
Requires-Dist: Flask-Security
Requires-Dist: werkzeug (<1.0.0)
Requires-Dist: Flask-Login
Requires-Dist: Flask-Dance
Requires-Dist: ruamel.yaml


<p align="center">
  <a href="https://github.com/Clinical-Genomics/genotype">
    <img width="240px" height="180px" src="artwork/icon.png"/>
  </a>
</p>

# Genotype [![Documentation Status][readthedocs-img]][readthedocs-url] [![Build Status][travis-img]][travis-url]
Manage SNP calling comparisons at Clinical Genomics. The package exposes a CLI and a bare bones web interface to visualize results stored in a SQLite database.

## Install

```bash
$ conda install -c bioconda pysam pyyaml sqlalchemy flask
$ pip install genotype==2.0.0-beta3
```

## License
MIT. See the [LICENSE](LICENSE) file for more details.



[readthedocs-url]: https://readthedocs.org/projects/genotype/?badge=latest
[readthedocs-img]: https://readthedocs.org/projects/genotype/badge/?version=latest

[travis-url]: https://travis-ci.org/Clinical-Genomics/genotype
[travis-img]: https://img.shields.io/travis/Clinical-Genomics/genotype.svg?style=flat


