LICENSE
README.md
pyproject.toml
genomicshelper/__init__.py
genomicshelper/g_Log.py
genomicshelper/g_Protocol.py
genomicshelper/g_init.py
genomicshelper/ghelp.py
genomicshelper/r_run.py
genomicshelper/s_script.py
genomicshelper/t_add_template.py
genomicshelper/t_copy_template.py
genomicshelper/t_load_header.py
genomicshelper/t_load_template.py
genomicshelper/t_parse_template.py
genomicshelper/t_print_template.py
genomicshelper/t_search_template.py
genomicshelper.egg-info/PKG-INFO
genomicshelper.egg-info/SOURCES.txt
genomicshelper.egg-info/dependency_links.txt
genomicshelper.egg-info/entry_points.txt
genomicshelper.egg-info/top_level.txt
genomicshelper/template/0_template
genomicshelper/template/0_template_py
genomicshelper/template/admixture.tmp
genomicshelper/template/admixture_cv.tmp
genomicshelper/template/apptainer.tmp
genomicshelper/template/apt.tmp
genomicshelper/template/apt_get.tmp
genomicshelper/template/awk_replace.tmp
genomicshelper/template/awk_split.tmp
genomicshelper/template/bash.header
genomicshelper/template/bcf2bed.tmp
genomicshelper/template/bcf2vcf.tmp
genomicshelper/template/bcf_contig.tmp
genomicshelper/template/bcf_filter.tmp
genomicshelper/template/bcf_format.tmp
genomicshelper/template/bcf_header.tmp
genomicshelper/template/bcf_info.tmp
genomicshelper/template/bcf_meta.tmp
genomicshelper/template/bcf_samples.tmp
genomicshelper/template/bcf_stats.tmp
genomicshelper/template/bcf_vars.tmp
genomicshelper/template/bcftools_view.tmp
genomicshelper/template/bed2bgen.tmp
genomicshelper/template/bed2pgen.tmp
genomicshelper/template/bed2vcf.tmp
genomicshelper/template/brew.tmp
genomicshelper/template/chmod_onlyowner.tmp
genomicshelper/template/chmod_readonly.tmp
genomicshelper/template/conda_env.tmp
genomicshelper/template/conda_env_py.tmp
genomicshelper/template/conda_env_r.tmp
genomicshelper/template/csv2tsv.tmp
genomicshelper/template/curl.tmp
genomicshelper/template/deploy_github_page.tmp
genomicshelper/template/docker_pull.tmp
genomicshelper/template/eig2bed.tmp
genomicshelper/template/eigenstrat2ped.tmp
genomicshelper/template/excel2tsv.tmp
genomicshelper/template/export.tmp
genomicshelper/template/fastqc.tmp
genomicshelper/template/for.tmp
genomicshelper/template/fq2bam.tmp
genomicshelper/template/ftp.tmp
genomicshelper/template/gatk.tmp
genomicshelper/template/gcta_greml.tmp
genomicshelper/template/gcta_grm.tmp
genomicshelper/template/gctb.tmp
genomicshelper/template/get_lines.tmp
genomicshelper/template/git.tmp
genomicshelper/template/git_config.tmp
genomicshelper/template/grep.tmp
genomicshelper/template/grid.tmp
genomicshelper/template/grid_qdel.tmp
genomicshelper/template/grid_qsub.tmp
genomicshelper/template/gwaslab_align
genomicshelper/template/gwaslab_align.tmp
genomicshelper/template/gwaslab_compare_effect.tmp
genomicshelper/template/gwaslab_format.tmp
genomicshelper/template/gwaslab_get_hapmap3.tmp
genomicshelper/template/gwaslab_infer_ancestry.tmp
genomicshelper/template/gwaslab_infer_build.tmp
genomicshelper/template/gwaslab_ldsc.tmp
genomicshelper/template/gwaslab_liftover.tmp
genomicshelper/template/gwaslab_metal.tmp
genomicshelper/template/gwaslab_mqq.tmp
genomicshelper/template/gwaslab_pipeline.tmp
genomicshelper/template/gwaslab_region.tmp
genomicshelper/template/gwaslab_remove_dup.tmp
genomicshelper/template/gwaslab_rsid.tmp
genomicshelper/template/gwaslab_stacked.tmp
genomicshelper/template/haps2bed.tmp
genomicshelper/template/head_excel.tmp
genomicshelper/template/hello.tmp
genomicshelper/template/hello1.tmp
genomicshelper/template/hello2.tmp
genomicshelper/template/hold.header
genomicshelper/template/hostname.tmp
genomicshelper/template/if.tmp
genomicshelper/template/if_else.tmp
genomicshelper/template/if_file.tmp
genomicshelper/template/ifconfig.tmp
genomicshelper/template/index_bcf.tmp
genomicshelper/template/index_bed.tmp
genomicshelper/template/index_bgen.tmp
genomicshelper/template/index_fasta.tmp
genomicshelper/template/index_vcf.tmp
genomicshelper/template/install_docker.tmp
genomicshelper/template/install_fastqc.tmp
genomicshelper/template/install_gwaslab.tmp
genomicshelper/template/install_mcp.tmp
genomicshelper/template/install_miniconda.tmp
genomicshelper/template/install_mkdocs.tmp
genomicshelper/template/install_parabricks.tmp
genomicshelper/template/install_plink.tmp
genomicshelper/template/install_py_data.tmp
genomicshelper/template/install_uv.tmp
genomicshelper/template/ip_address.tmp
genomicshelper/template/jupyter.tmp
genomicshelper/template/ldlink.tmp
genomicshelper/template/ldsc_h2.tmp
genomicshelper/template/ldsc_munge.tmp
genomicshelper/template/ldsc_r2.tmp
genomicshelper/template/ldsc_seg.tmp
genomicshelper/template/lid_switch.tmp
genomicshelper/template/llm_apptainer.tmp
genomicshelper/template/llm_bcftools_view.tmp
genomicshelper/template/llm_curl.tmp
genomicshelper/template/llm_eagle.tmp
genomicshelper/template/llm_gctb.tmp
genomicshelper/template/llm_git_config.tmp
genomicshelper/template/llm_gwaslab_compare_effect.tmp
genomicshelper/template/llm_gwaslab_pipeline.tmp
genomicshelper/template/llm_if.tmp
genomicshelper/template/llm_install_docker.tmp
genomicshelper/template/llm_install_miniconda.tmp
genomicshelper/template/llm_plink_check_sex.tmp
genomicshelper/template/llm_plink_clump.tmp
genomicshelper/template/llm_plink_filter_by_window.tmp
genomicshelper/template/llm_plink_freq.tmp
genomicshelper/template/llm_plink_glm.tmp
genomicshelper/template/llm_plink_high_ld_set.tmp
genomicshelper/template/llm_plink_ibd.tmp
genomicshelper/template/llm_plink_ld.tmp
genomicshelper/template/llm_plink_merge.tmp
genomicshelper/template/llm_plink_qc.tmp
genomicshelper/template/llm_plink_roh.tmp
genomicshelper/template/llm_plink_score.tmp
genomicshelper/template/llm_plink_sex_check.tmp
genomicshelper/template/llm_plink_snps_only.tmp
genomicshelper/template/llm_plink_split_par.tmp
genomicshelper/template/llm_plink_update_sex.tmp
genomicshelper/template/llm_r_coloc.tmp
genomicshelper/template/llm_regenie_quant_s1bed.tmp
genomicshelper/template/llm_regenie_quant_s1s2bed.tmp
genomicshelper/template/llm_regenie_quant_s2bgen.tmp
genomicshelper/template/llm_regenie_quant_s2pgen.tmp
genomicshelper/template/llm_run_magma.tmp
genomicshelper/template/llm_run_scdrs.tmp
genomicshelper/template/llm_scanpy.tmp
genomicshelper/template/llm_shell_replace.tmp
genomicshelper/template/llm_singularity.tmp
genomicshelper/template/llm_slurm.tmp
genomicshelper/template/llm_tree.tmp
genomicshelper/template/llm_uv.tmp
genomicshelper/template/nkf_utf8.tmp
genomicshelper/template/os_version.tmp
genomicshelper/template/pass.header
genomicshelper/template/pgen2ben.tmp
genomicshelper/template/pgen2vcf.tmp
genomicshelper/template/picard.tmp
genomicshelper/template/plink_check_sex.tmp
genomicshelper/template/plink_clump.tmp
genomicshelper/template/plink_extract_A_pgen.tmp
genomicshelper/template/plink_filter_by_window.tmp
genomicshelper/template/plink_freq.tmp
genomicshelper/template/plink_fst.tmp
genomicshelper/template/plink_genome.tmp
genomicshelper/template/plink_glm.tmp
genomicshelper/template/plink_grm.tmp
genomicshelper/template/plink_high_ld_set.tmp
genomicshelper/template/plink_ibd.tmp
genomicshelper/template/plink_ld.tmp
genomicshelper/template/plink_make_set.tmp
genomicshelper/template/plink_merge.tmp
genomicshelper/template/plink_merge_par.tmp
genomicshelper/template/plink_pca.tmp
genomicshelper/template/plink_pruning.tmp
genomicshelper/template/plink_qc.tmp
genomicshelper/template/plink_rog.tmp
genomicshelper/template/plink_score.tmp
genomicshelper/template/plink_set_allele.tmp
genomicshelper/template/plink_snps_only.tmp
genomicshelper/template/plink_snpset.tmp
genomicshelper/template/plink_split_par.tmp
genomicshelper/template/plink_update_sex.tmp
genomicshelper/template/py_pca.tmp
genomicshelper/template/py_re.tmp
genomicshelper/template/py_re_flag.tmp
genomicshelper/template/py_string.tmp
genomicshelper/template/py_umap.tmp
genomicshelper/template/python3.header
genomicshelper/template/qsub.header
genomicshelper/template/r_coloc.tmp
genomicshelper/template/r_susie.tmp
genomicshelper/template/r_twosamplemr.tmp
genomicshelper/template/regenie_binary_s1bed.tmp
genomicshelper/template/regenie_binary_s1s2.tmp
genomicshelper/template/regenie_binary_s1s2bed.tmp
genomicshelper/template/regenie_binary_s2bgen.tmp
genomicshelper/template/regenie_binary_s2pgen.tmp
genomicshelper/template/regenie_quant_s1bed.tmp
genomicshelper/template/regenie_quant_s1s2bed.tmp
genomicshelper/template/regenie_quant_s2bgen.tmp
genomicshelper/template/regenie_quant_s2pgen.tmp
genomicshelper/template/rsync_all.tmp
genomicshelper/template/rsync_exclude.tmp
genomicshelper/template/rsync_include.tmp
genomicshelper/template/rsync_round.tmp
genomicshelper/template/rsync_size.tmp
genomicshelper/template/run_eagle.tmp
genomicshelper/template/run_magma.tmp
genomicshelper/template/run_metal.tmp
genomicshelper/template/run_mkdocs.tmp
genomicshelper/template/run_mtag.tmp
genomicshelper/template/run_popcorn_easeur.tmp
genomicshelper/template/run_prscs.tmp
genomicshelper/template/run_prscsx.tmp
genomicshelper/template/run_scdrs.tmp
genomicshelper/template/samba.tmp
genomicshelper/template/scanpy.tmp
genomicshelper/template/sed_replace.tmp
genomicshelper/template/service.tmp
genomicshelper/template/shell_file.tmp
genomicshelper/template/shell_replace.tmp
genomicshelper/template/show_disk.tmp
genomicshelper/template/show_memory.tmp
genomicshelper/template/show_process.tmp
genomicshelper/template/show_users.tmp
genomicshelper/template/singularity.tmp
genomicshelper/template/singularity_build.tmp
genomicshelper/template/singularity_image.tmp
genomicshelper/template/singularity_pull.tmp
genomicshelper/template/singularity_run.tmp
genomicshelper/template/skip_and_show.tmp
genomicshelper/template/skip_first_lines.tmp
genomicshelper/template/smr.tmp
genomicshelper/template/srkn.header
genomicshelper/template/ssh_host.tmp
genomicshelper/template/ssh_keygen.tmp
genomicshelper/template/ssv2tsv.tmp
genomicshelper/template/systemctl.tmp
genomicshelper/template/tar_bz2_d.tmp
genomicshelper/template/tar_c.tmp
genomicshelper/template/tar_gz_d.tmp
genomicshelper/template/tr.tmp
genomicshelper/template/tree.tmp
genomicshelper/template/treemix.tmp
genomicshelper/template/tsv2csv.tmp
genomicshelper/template/uv.tmp
genomicshelper/template/vcf2bcf.tmp
genomicshelper/template/vcf2bed.tmp
genomicshelper/template/vcf2bgen.tmp
genomicshelper/template/vcf2ped.tmp
genomicshelper/template/vcf2pgen.tmp
genomicshelper/template/vcf2tped.tmp
genomicshelper/template/vcf_bcftools.tmp
genomicshelper/template/vcf_contig.tmp
genomicshelper/template/vcf_drop_genotype.tmp
genomicshelper/template/vcf_extract_sample.tmp
genomicshelper/template/vcf_filter.tmp
genomicshelper/template/vcf_format.tmp
genomicshelper/template/vcf_gatk.tmp
genomicshelper/template/vcf_header.tmp
genomicshelper/template/vcf_info.tmp
genomicshelper/template/vcf_meta.tmp
genomicshelper/template/vcf_meta_noheader.tmp
genomicshelper/template/vcf_samples.tmp
genomicshelper/template/vcf_stats.tmp
genomicshelper/template/vcf_tool.tmp
genomicshelper/template/vcf_vars.tmp
genomicshelper/template/veracrypt_mount.tmp
genomicshelper/template/wget.tmp
genomicshelper/template/while.tmp
genomicshelper/template/while_read.tmp
genomicshelper/template/zsh.header
genomicshelper/template/zstd_d.tmp