biopython>=1.70
pandas>=1.0.0
numpy
scikit-bio
scipy<1.9
vcfpy
sqlalchemy
pymysql
requests
ete3
PyQt5
biocommons.seqrepo
click
click-config-file
coloredlogs
pyyaml
pyroaring
sourmash
pybedtools
snakemake
Jinja2
pathvalidate
pytest
zipp
packaging
