setuptools<58
biopython>=1.70
pandas>=1.0.0
numpy
scikit-bio
scipy
pyvcf
sqlalchemy
pymysql
requests
ete3
PyQt5
jsonschema==3.2.0
ga4gh.vrs[extras]==0.6.2
biocommons.seqrepo
click
click-config-file
coloredlogs
pyyaml
pyroaring
sourmash
pybedtools
snakemake
Jinja2
pathvalidate
pytest
tomli<2.0.0,>=0.2.6
zipp
