.bumpversion.cfg
.coveragerc
.readthedocs.yml
AUTHORS.rst
CHANGELOG.rst
CONTRIBUTING.rst
LICENSE
MANIFEST.in
README.rst
conftest.py
pyproject.toml
requirements.txt
setup.cfg
setup.py
tox.ini
docs/authors.rst
docs/changelog.rst
docs/conf.py
docs/contributing.rst
docs/index.rst
docs/installation.rst
docs/readme.rst
docs/requirements.txt
docs/spelling_wordlist.txt
docs/usage.rst
docs/reference/index.rst
scripts/conda_build.sh
scripts/lint_code.sh
scripts/pre-commit.sh
scripts/run_tests.sh
scripts/test_only.sh
scripts/tox_build.sh
src/genomehubs/__init__.py
src/genomehubs/__main__.py
src/genomehubs/genomehubs.py
src/genomehubs.egg-info/PKG-INFO
src/genomehubs.egg-info/SOURCES.txt
src/genomehubs.egg-info/dependency_links.txt
src/genomehubs.egg-info/entry_points.txt
src/genomehubs.egg-info/requires.txt
src/genomehubs.egg-info/top_level.txt
src/genomehubs/config/config.yaml
src/genomehubs/config/dist.config.yaml
src/genomehubs/lib/__init__.py
src/genomehubs/lib/_assembly_metadata.py
src/genomehubs/lib/analysis.py
src/genomehubs/lib/assembly.py
src/genomehubs/lib/attributes.py
src/genomehubs/lib/btk.py
src/genomehubs/lib/config.py
src/genomehubs/lib/es_functions.py
src/genomehubs/lib/files.py
src/genomehubs/lib/fill.py
src/genomehubs/lib/gbif.py
src/genomehubs/lib/hub.py
src/genomehubs/lib/index.py
src/genomehubs/lib/init.py
src/genomehubs/lib/ncbi.py
src/genomehubs/lib/parse.py
src/genomehubs/lib/run.py
src/genomehubs/lib/search.py
src/genomehubs/lib/taxon.py
src/genomehubs/lib/taxonomy.py
src/genomehubs/lib/version.py
src/genomehubs/lib/wikidata.py
src/genomehubs/templates/analysis.json
src/genomehubs/templates/assembly.json
src/genomehubs/templates/assembly.types.yaml
src/genomehubs/templates/attributes.json
src/genomehubs/templates/btk.types.yaml
src/genomehubs/templates/file.json
src/genomehubs/templates/identifiers.json
src/genomehubs/templates/organelle.types.yaml
src/genomehubs/templates/taxon.json
src/genomehubs/templates/taxon.types.yaml
src/genomehubs/templates/taxonomy.json
src/genomehubs/templates/wikidata.names.yaml
src/genomehubs/templates/scripts/analysis_lookup.json
src/genomehubs/templates/scripts/analysis_sayt.json
src/genomehubs/templates/scripts/analysis_suggest.json
src/genomehubs/templates/scripts/assembly_lookup.json
src/genomehubs/templates/scripts/assembly_sayt.json
src/genomehubs/templates/scripts/assembly_suggest.json
src/genomehubs/templates/scripts/attribute_types_by_group.json
src/genomehubs/templates/scripts/attribute_values_by_taxon.json
src/genomehubs/templates/scripts/attributes_by_keyword_value.json
src/genomehubs/templates/scripts/attributes_identifiers_by_keyword_value.json
src/genomehubs/templates/scripts/attributes_names_by_keyword_value.json
src/genomehubs/templates/scripts/file_lookup.json
src/genomehubs/templates/scripts/file_sayt.json
src/genomehubs/templates/scripts/file_suggest.json
src/genomehubs/templates/scripts/max_nested_value.json
src/genomehubs/templates/scripts/max_nested_value_by_key_value.json
src/genomehubs/templates/scripts/max_nested_value_by_type.json
src/genomehubs/templates/scripts/max_nested_value_by_type_by_lineage.json
src/genomehubs/templates/scripts/search_by_ancestral_taxon.json
src/genomehubs/templates/scripts/search_by_taxon.json
src/genomehubs/templates/scripts/taxon_attributes_by_root_depth.json
src/genomehubs/templates/scripts/taxon_attributes_by_taxon_id.json
src/genomehubs/templates/scripts/taxon_by_any_name.json
src/genomehubs/templates/scripts/taxon_by_any_name_by_lineage.json
src/genomehubs/templates/scripts/taxon_by_lineage.json
src/genomehubs/templates/scripts/taxon_by_name.json
src/genomehubs/templates/scripts/taxon_by_specific_name.json
src/genomehubs/templates/scripts/taxon_lookup.json
src/genomehubs/templates/scripts/taxon_lookup_by_lineage.json
src/genomehubs/templates/scripts/taxon_missing_attribute_by_ancestor_id.json
src/genomehubs/templates/scripts/taxon_name_sayt_attribute.json
src/genomehubs/templates/scripts/taxon_names.json
src/genomehubs/templates/scripts/taxon_names_by_root.json
src/genomehubs/templates/scripts/taxon_sayt.json
src/genomehubs/templates/scripts/taxon_suggest.json
src/genomehubs/templates/scripts/taxonomy_node_by_taxon_id.json
src/genomehubs/templates/scripts/value_by_type_by_lineage.json