.gitignore
LICENSE.txt
README.md
conf-SRR606249.yml
conf-p8808mo11.yml
conf-p8808mo9.yml
conf-twofoo-head.yml
conf.yml
gather-p8808mo11.ipynb
gather-p8808mo9.ipynb
gather-podar.ipynb
gathergram.ipynb
hash-upsetr-example.ipynb
setup.py
snakemake.slurm
genome_grist/__init__.py
genome_grist/__main__.py
genome_grist/genbank_genomes.py
genome_grist/subtract_gather.py
genome_grist/version.py
genome_grist.egg-info/PKG-INFO
genome_grist.egg-info/SOURCES.txt
genome_grist.egg-info/dependency_links.txt
genome_grist.egg-info/entry_points.txt
genome_grist.egg-info/requires.txt
genome_grist.egg-info/top_level.txt
genome_grist/conf/Snakefile
genome_grist/conf/env/minimap2.yml
genome_grist/conf/env/papermill.yml
genome_grist/conf/env/sourmash.yml
genome_grist/conf/env/sra.yml
genome_grist/conf/env/trim.yml
genome_grist/conf/env/wget.yml
genome_grist/notebooks/gather-summary.ipynb
genome_grist/notebooks/report-sample.ipynb
inputs/adapters.fa
tests/__init__.py
tests/pytest_utils.py
tests/test_snakemake.py
tests/test-data/twofoo-head.abundtrim.fq.gz
tests/test-data/twofoo-head.x.genbank.gather.csv
tests/test-data/twofoo-head.x.genbank.gather.sig