anndata > 0.9.0
genimtools >= 0.0.12
fastembed >= 0.2.5
gensim
genomicranges >= 0.4.1
huggingface_hub
logmuse
matplotlib
hnswlib
numpy >= 1.24.0
paramiko >= 3.0.0
peppy>=0.40.1
pyBigWig
qdrant_client
requests >= 2.31.0
scanpy
seaborn
torch
ubiquerg >= 0.6.3
pyarrow
iranges
lightning
langchain-huggingface==0.0.2
botocore >= 1.34.54
boto3 >=  1.34.54
scipy <= 1.12.0
pybiocfilecache >= 0.4.0
zarr >= 2.17.2
pyyaml >= 6.0.1 # for s3fs because of the errors
s3fs >= 2024.3.1
