.gitignore
.pre-commit-config.yaml
CITATION.cff
LICENSE
README.md
pyproject.toml
examples/pretrain/mlm/genhpf/flattened_pt.yaml
examples/pretrain/simclr/genhpf/genhpf_hierarchical_pt.yaml
examples/pretrain/wav2vec2/genhpf/hierarchical_pt.yaml
examples/test/genhpf/genhpf_flattened.yaml
examples/test/genhpf/genhpf_hierarchical.yaml
examples/test/genhpf/meds_hierarchical.yaml
examples/train/genhpf/genhpf_flattened_ft.yaml
examples/train/genhpf/genhpf_hierarchical_ft.yaml
examples/train/genhpf/genhpf_hierarchical_scr.yaml
examples/train/genhpf/meds_hierarchical_scr.yaml
src/genhpf/__init__.py
src/genhpf/trainer.py
src/genhpf.egg-info/PKG-INFO
src/genhpf.egg-info/SOURCES.txt
src/genhpf.egg-info/dependency_links.txt
src/genhpf.egg-info/entry_points.txt
src/genhpf.egg-info/requires.txt
src/genhpf.egg-info/top_level.txt
src/genhpf/configs/__init__.py
src/genhpf/configs/config.yaml
src/genhpf/configs/configs.py
src/genhpf/configs/constants.py
src/genhpf/configs/initialize.py
src/genhpf/configs/utils.py
src/genhpf/criterions/__init__.py
src/genhpf/criterions/binary_cross_entropy.py
src/genhpf/criterions/binary_cross_entropy_with_logits.py
src/genhpf/criterions/criterion.py
src/genhpf/criterions/cross_entropy.py
src/genhpf/criterions/multi_task_criterion.py
src/genhpf/criterions/simclr_criterion.py
src/genhpf/criterions/wav2vec2_criterion.py
src/genhpf/datasets/__init__.py
src/genhpf/datasets/dataset.py
src/genhpf/datasets/genhpf_dataset.py
src/genhpf/datasets/meds_dataset.py
src/genhpf/loggings/__init__.py
src/genhpf/loggings/meters.py
src/genhpf/loggings/metrics.py
src/genhpf/loggings/progress_bar.py
src/genhpf/models/__init__.py
src/genhpf/models/genhpf.py
src/genhpf/models/genhpf_mlm.py
src/genhpf/models/genhpf_predictor.py
src/genhpf/models/genhpf_simclr.py
src/genhpf/models/genhpf_wav2vec2.py
src/genhpf/modules/__init__.py
src/genhpf/modules/gather_layer.py
src/genhpf/modules/grad_multiply.py
src/genhpf/modules/gumbel_vector_quantizer.py
src/genhpf/modules/identity_layer.py
src/genhpf/modules/layer_norm.py
src/genhpf/modules/positional_encoding.py
src/genhpf/scripts/__init__.py
src/genhpf/scripts/test.py
src/genhpf/scripts/train.py
src/genhpf/scripts/preprocess/__init__.py
src/genhpf/scripts/preprocess/manifest.py
src/genhpf/scripts/preprocess/preprocess_meds.py
src/genhpf/scripts/preprocess/genhpf/README.md
src/genhpf/scripts/preprocess/genhpf/__init__.py
src/genhpf/scripts/preprocess/genhpf/main.py
src/genhpf/scripts/preprocess/genhpf/manifest.py
src/genhpf/scripts/preprocess/genhpf/sample_dataset.py
src/genhpf/scripts/preprocess/genhpf/ehrs/__init__.py
src/genhpf/scripts/preprocess/genhpf/ehrs/ehr.py
src/genhpf/scripts/preprocess/genhpf/ehrs/eicu.py
src/genhpf/scripts/preprocess/genhpf/ehrs/mimiciii.py
src/genhpf/scripts/preprocess/genhpf/ehrs/mimiciv.py
src/genhpf/scripts/preprocess/genhpf/utils/__init__.py
src/genhpf/scripts/preprocess/genhpf/utils/utils.py
src/genhpf/utils/checkpoint_utils.py
src/genhpf/utils/data_utils.py
src/genhpf/utils/distributed_utils.py
src/genhpf/utils/file_io.py
src/genhpf/utils/pdb.py
src/genhpf/utils/utils.py