# geney/splicing/ — Splice-site prediction, transcript libraries, and isoform enumeration.
from .engines import (
    sai_predict_probs,
    run_spliceai_seq,
    run_splicing_engine,
    predict_splicing,
    adjoin_splicing_outcomes,
    set_openspliceai_model_dir,
    get_openspliceai_model_dir,
    set_splicing_device,
    get_splicing_device,
    _prepare_splice_input,
    _assemble_splice_df,
    batch_run_splicing_engine,
)
from .splice_graph import SpliceSimulator
from .transcripts import TranscriptLibrary

__all__ = [
    "sai_predict_probs",
    "run_spliceai_seq",
    "run_splicing_engine",
    "predict_splicing",
    "adjoin_splicing_outcomes",
    "set_openspliceai_model_dir",
    "get_openspliceai_model_dir",
    "set_splicing_device",
    "get_splicing_device",
    "SpliceSimulator",
    "TranscriptLibrary",
]
