MANIFEST.in
README.md
requirements.txt
setup.py
geney/__init__.py
geney/engine.py
geney/pipelines.py
geney/results.py
geney/screen.py
geney/screen_alphagenome.py
geney/transcript_tools.py
geney/utils.py
geney/variants.py
geney.egg-info/PKG-INFO
geney.egg-info/SOURCES.txt
geney.egg-info/dependency_links.txt
geney.egg-info/requires.txt
geney.egg-info/top_level.txt
geney/folding/__init__.py
geney/folding/codons.py
geney/folding/conserved.py
geney/folding/delta_mfe.py
geney/folding/pipeline.py
geney/folding/precompute.py
geney/folding/query.py
geney/folding/reference.py
geney/folding/vienna.py
geney/oncosplice/__init__.py
geney/oncosplice/align.py
geney/oncosplice/scoring.py
geney/splicing/__init__.py
geney/splicing/engines.py
geney/splicing/splice_graph.py
geney/splicing/transcripts.py
geney/tis/__init__.py
geney/tis/analysis.py
geney/tis/encoding.py
geney/tis/helpers.py
geney/tis/integration.py
geney/tis/metrics.py
geney/tis/model.py
geney/tis/prediction.py
geney/tis/visualization.py
geney/transcription/__init__.py
geney/transcription/encoding.py
geney/transcription/model.py
geney/transcription/pipeline.py
geney/transcription/prediction.py
geney/transcription/targets_human.txt
tests/__init__.py
tests/benchmark_screen.py
tests/profile_pipeline.py
tests/test_failed_mutations.py
tests/test_mutation_pipeline.py
tests/test_screen.py