# oncosplice/__init__.py
from .variants import Mutation, MutationalEvent, MutationLibrary
from .engines import (
    sai_predict_probs,
    run_spliceai_seq,
    run_splicing_engine,
)
from .transcripts import TranscriptLibrary
from .splicing_table import adjoin_splicing_outcomes
from .splice_graph import SpliceSimulator
from .pipelines import oncosplice_pipeline_single_transcript
from .samples import *

__all__ = [
    "Mutation",
    "MutationalEvent",
    "MutationLibrary",
    "sai_predict_probs",
    "run_spliceai_seq",
    "run_splicing_engine",
    "TranscriptLibrary",
    "adjoin_splicing_outcomes",
    "SpliceSimulator",
    "oncosplice_pipeline_single_transcript",
]