LICENSE
MANIFEST.in
README.md
setup.py
geneparse/__init__.py
geneparse/config.py
geneparse/core.py
geneparse/exceptions.py
geneparse/logging.py
geneparse/utils.py
geneparse/version.py
geneparse.egg-info/PKG-INFO
geneparse.egg-info/SOURCES.txt
geneparse.egg-info/dependency_links.txt
geneparse.egg-info/not-zip-safe
geneparse.egg-info/requires.txt
geneparse.egg-info/top_level.txt
geneparse/extract/__init__.py
geneparse/extract/__main__.py
geneparse/extract/extractor.py
geneparse/index/__init__.py
geneparse/index/__main__.py
geneparse/index/impute2.py
geneparse/readers/__init__.py
geneparse/readers/bgen.py
geneparse/readers/dataframe.py
geneparse/readers/dict_based.py
geneparse/readers/impute2.py
geneparse/readers/plink.py
geneparse/readers/vcf.py
geneparse/testing/__init__.py
geneparse/testing/simulation.py
geneparse/tests/__init__.py
geneparse/tests/__main__.py
geneparse/tests/generic_tests.py
geneparse/tests/test_bgen.py
geneparse/tests/test_core.py
geneparse/tests/test_dataframe.py
geneparse/tests/test_dict_based_reader.py
geneparse/tests/test_extractor.py
geneparse/tests/test_genotypes.py
geneparse/tests/test_impute2.py
geneparse/tests/test_plink.py
geneparse/tests/test_serialization.py
geneparse/tests/test_testing.py
geneparse/tests/test_utils.py
geneparse/tests/test_variants.py
geneparse/tests/test_vcf.py
geneparse/tests/truth.py
geneparse/tests/data/impute2/generate_impute2_from_plink.py
geneparse/tests/data/impute2/impute2_test.impute2.gz
geneparse/tests/data/impute2/impute2_test.impute2.gz.idx
geneparse/tests/data/impute2/impute2_test.sample
geneparse/tests/data/ld/common_extracted_1kg.bed
geneparse/tests/data/ld/common_extracted_1kg.bim
geneparse/tests/data/ld/common_extracted_1kg.fam
geneparse/tests/data/ld/common_extracted_1kg.missing.bed
geneparse/tests/data/ld/common_extracted_1kg.missing.bim
geneparse/tests/data/ld/common_extracted_1kg.missing.fam
geneparse/tests/data/ld/plink_rs1800775_pairs.ld
geneparse/tests/data/ld/plink_rs1800775_pairs.missing.ld
geneparse/tests/data/plink/btest.bed
geneparse/tests/data/plink/btest.bim
geneparse/tests/data/plink/btest.fam
geneparse/tests/data/plink/test.map
geneparse/tests/data/plink/test.ped
geneparse/tests/data/vcf/test.vcf.gz
geneparse/tests/data/vcf/test.vcf.gz.tbi
geneparse/tools/__init__.py
geneparse/tools/compare_calls.py