Metadata-Version: 1.0
Name: geneblocks
Version: 0.3.5
Summary: Library to compare DNA sequences (diff, common blocks, etc.)
Home-page: https://github.com/Edinburgh-Genome-Foundry/geneblocks
Author: Zulko
Author-email: UNKNOWN
License: MIT
Description-Content-Type: UNKNOWN
Description: GeneBlocks
        =============
        
        .. image:: https://travis-ci.org/Edinburgh-Genome-Foundry/DnaChisel.svg?branch=master
           :target: https://travis-ci.org/Edinburgh-Genome-Foundry/Geneblocks
           :alt: Travis CI build status
        
        .. image:: https://coveralls.io/repos/github/Edinburgh-Genome-Foundry/Geneblocks/badge.svg
          :target: https://coveralls.io/github/Edinburgh-Genome-Foundry/Geneblocks
        
        GeneBlocks is a Python library to compare DNA sequences. It can be used to:
        
        - Find common blocks in a group of DNA sequences, to factorize them (e.g. only analyze or synthetize each common block once)
        - Highlight differences between sequences (insertions, deletions, mutations)
        - Transfer Genbank features from one record to another sharing similar subsequences.
        
        At the Edinburgh Genome Foundry, we use GeneBlocks to optimize sequence assembly, explore sets of non-annotated sequences, or visualize the differences
        between different versions of a sequence, and re-annotate records coming from third parties such as DNA manufacturers.
        
        Infos
        -----
        
        **PIP installation:**
        
        .. code:: bash
        
          pip install geneblocks
        
        **Github Page**
        
        `<https://github.com/Edinburgh-Genome-Foundry/geneblocks>`_
        
        **Live demos**
        
        
        `Find common sequence blocks <https://cuba.genomefoundry.org/find-common-blocks>`_
        
        `Plot sequence diffs <https://cuba.genomefoundry.org/compare-two-sequences>`_
        
        `Transfer Genbank features between records <https://cuba.genomefoundry.org/transfer-features>`_
        
        **License:** MIT, Copyright Edinburgh Genome Foundry
        
        More biology software
        -----------------------
        
        .. image:: https://raw.githubusercontent.com/Edinburgh-Genome-Foundry/Edinburgh-Genome-Foundry.github.io/master/static/imgs/logos/egf-codon-horizontal.png
          :target: https://edinburgh-genome-foundry.github.io/
        
        Geneblocks is part of the `EGF Codons <https://edinburgh-genome-foundry.github.io/>`_ synthetic biology software suite for DNA design, manufacturing and validation.
Keywords: DNA sequence blocks diff synthetic-biology bioinformatics
Platform: UNKNOWN
