.gitignore
README.md
pyproject.toml
.github/workflows/package.yml
.github/workflows/test.yml
src/gemcat/__init__.py
src/gemcat/adjacency_transformation.py
src/gemcat/cli.py
src/gemcat/expression.py
src/gemcat/io.py
src/gemcat/model.py
src/gemcat/ranking.py
src/gemcat/utils.py
src/gemcat/verification.py
src/gemcat/workflows.py
src/gemcat.egg-info/PKG-INFO
src/gemcat.egg-info/SOURCES.txt
src/gemcat.egg-info/dependency_links.txt
src/gemcat.egg-info/entry_points.txt
src/gemcat.egg-info/requires.txt
src/gemcat.egg-info/top_level.txt
tests/fixtures.py
tests/test_adjacency_calculation.py
tests/test_cli.py
tests/test_expression.py
tests/test_io.py
tests/test_model.py
tests/test_pagerank.py
tests/test_sanity_checks.py
tests/test_seeds.py
tests/test_utils.py
tests/test_verification.py
tests/test_workflows.py
tests/test_models/create_test_models.py
tests/test_models/highly_connected.json
tests/test_models/highly_connected.xml
tests/test_models/mini.json
tests/test_models/mini.xml
tests/test_models/mini_complex_gpr.json
tests/test_models/mini_complex_gpr.xml
tests/test_models/mini_complex_gpr_gid_version.json
tests/test_models/mini_complex_gpr_gid_version.xml
tests/test_models/mini_redox.json
tests/test_models/mini_redox.xml
tests/test_models/mini_reversible.json
tests/test_models/mini_reversible.xml
tests/test_models/seeds_test.csv
tests/test_models/stoichiometry_trp.csv
tests/test_seq/expression_mini.csv