.dockerignore
CODE_OF_CONDUCT.md
CONTRIBUTING.md
Dockerfile-CPU
Dockerfile-CUDA11.8
Dockerfile-CUDA12.1
Dockerfile-ROCm
LICENSE
MANIFEST.in
README.md
SECURITY.md
setup.py
GANDLF/__init__.py
GANDLF/config_manager.py
GANDLF/inference_manager.py
GANDLF/logger.py
GANDLF/logging_config.yaml
GANDLF/parseConfig.py
GANDLF/training_manager.py
GANDLF/version.py
GANDLF.egg-info/PKG-INFO
GANDLF.egg-info/SOURCES.txt
GANDLF.egg-info/dependency_links.txt
GANDLF.egg-info/entry_points.txt
GANDLF.egg-info/not-zip-safe
GANDLF.egg-info/requires.txt
GANDLF.egg-info/top_level.txt
GANDLF/anonymize/__init__.py
GANDLF/anonymize/convert_to_nifti.py
GANDLF/cli/__init__.py
GANDLF/cli/config_generator.py
GANDLF/cli/data_split_saver.py
GANDLF/cli/deploy.py
GANDLF/cli/generate_metrics.py
GANDLF/cli/main_run.py
GANDLF/cli/patch_extraction.py
GANDLF/cli/post_training_model_optimization.py
GANDLF/cli/preprocess_and_save.py
GANDLF/cli/recover_config.py
GANDLF/compute/__init__.py
GANDLF/compute/forward_pass.py
GANDLF/compute/generic.py
GANDLF/compute/inference_loop.py
GANDLF/compute/loss_and_metric.py
GANDLF/compute/step.py
GANDLF/compute/training_loop.py
GANDLF/data/ImagesFromDataFrame.py
GANDLF/data/__init__.py
GANDLF/data/inference_dataloader_histopath.py
GANDLF/data/augmentation/__init__.py
GANDLF/data/augmentation/blur_enhanced.py
GANDLF/data/augmentation/hed_augs.py
GANDLF/data/augmentation/noise_enhanced.py
GANDLF/data/augmentation/rgb_augs.py
GANDLF/data/augmentation/rotations.py
GANDLF/data/augmentation/wrap_torchio.py
GANDLF/data/patch_miner/__init__.py
GANDLF/data/patch_miner/opm/__init__.py
GANDLF/data/patch_miner/opm/patch.py
GANDLF/data/patch_miner/opm/patch_manager.py
GANDLF/data/patch_miner/opm/utils.py
GANDLF/data/post_process/__init__.py
GANDLF/data/post_process/morphology.py
GANDLF/data/post_process/tensor.py
GANDLF/data/preprocessing/__init__.py
GANDLF/data/preprocessing/crop_zero_planes.py
GANDLF/data/preprocessing/non_zero_normalize.py
GANDLF/data/preprocessing/normalize_rgb.py
GANDLF/data/preprocessing/resample_minimum.py
GANDLF/data/preprocessing/rgb_conversion.py
GANDLF/data/preprocessing/threshold_and_clip.py
GANDLF/data/preprocessing/template_matching/__init__.py
GANDLF/data/preprocessing/template_matching/base.py
GANDLF/data/preprocessing/template_matching/histogram_matching.py
GANDLF/data/preprocessing/template_matching/stain_extractors.py
GANDLF/data/preprocessing/template_matching/stain_normalizer.py
GANDLF/data/preprocessing/template_matching/utils.py
GANDLF/entrypoints/__init__.py
GANDLF/entrypoints/anonymizer.py
GANDLF/entrypoints/cli_tool.py
GANDLF/entrypoints/collect_stats.py
GANDLF/entrypoints/config_generator.py
GANDLF/entrypoints/construct_csv.py
GANDLF/entrypoints/debug_info.py
GANDLF/entrypoints/deploy.py
GANDLF/entrypoints/generate_metrics.py
GANDLF/entrypoints/optimize_model.py
GANDLF/entrypoints/patch_miner.py
GANDLF/entrypoints/preprocess.py
GANDLF/entrypoints/recover_config.py
GANDLF/entrypoints/run.py
GANDLF/entrypoints/split_csv.py
GANDLF/entrypoints/subcommands.py
GANDLF/entrypoints/verify_install.py
GANDLF/grad_clipping/__init__.py
GANDLF/grad_clipping/adaptive_gradient_clipping.py
GANDLF/grad_clipping/clip_gradients.py
GANDLF/grad_clipping/grad_scaler.py
GANDLF/losses/__init__.py
GANDLF/losses/hybrid.py
GANDLF/losses/regression.py
GANDLF/losses/segmentation.py
GANDLF/metrics/__init__.py
GANDLF/metrics/classification.py
GANDLF/metrics/generic.py
GANDLF/metrics/regression.py
GANDLF/metrics/segmentation.py
GANDLF/metrics/synthesis.py
GANDLF/models/MSDNet.py
GANDLF/models/__init__.py
GANDLF/models/brain_age.py
GANDLF/models/deep_unet.py
GANDLF/models/densenet.py
GANDLF/models/dynunet_wrapper.py
GANDLF/models/efficientnet.py
GANDLF/models/fcn.py
GANDLF/models/imagenet_unet.py
GANDLF/models/imagenet_vgg.py
GANDLF/models/light_unet.py
GANDLF/models/light_unet_multilayer.py
GANDLF/models/modelBase.py
GANDLF/models/resnet.py
GANDLF/models/sdnet.py
GANDLF/models/transunet.py
GANDLF/models/uinc.py
GANDLF/models/unet.py
GANDLF/models/unet_multilayer.py
GANDLF/models/unetr.py
GANDLF/models/vgg.py
GANDLF/models/seg_modules/DecodingModule.py
GANDLF/models/seg_modules/DownsamplingModule.py
GANDLF/models/seg_modules/EncodingModule.py
GANDLF/models/seg_modules/FCNUpsamplingModule.py
GANDLF/models/seg_modules/IncConv.py
GANDLF/models/seg_modules/IncDownsamplingModule.py
GANDLF/models/seg_modules/IncDropout.py
GANDLF/models/seg_modules/IncUpsamplingModule.py
GANDLF/models/seg_modules/InceptionModule.py
GANDLF/models/seg_modules/InitialConv.py
GANDLF/models/seg_modules/Interpolate.py
GANDLF/models/seg_modules/ResNetModule.py
GANDLF/models/seg_modules/UpsamplingModule.py
GANDLF/models/seg_modules/__init__.py
GANDLF/models/seg_modules/add_conv_block.py
GANDLF/models/seg_modules/add_downsample_conv_block.py
GANDLF/models/seg_modules/average_pool.py
GANDLF/models/seg_modules/out_conv.py
GANDLF/optimizers/__init__.py
GANDLF/optimizers/wrap_monai.py
GANDLF/optimizers/wrap_torch.py
GANDLF/schedulers/__init__.py
GANDLF/schedulers/wrap_monai.py
GANDLF/schedulers/wrap_torch.py
GANDLF/utils/__init__.py
GANDLF/utils/data_splitter.py
GANDLF/utils/exceptions.py
GANDLF/utils/gandlf_logging.py
GANDLF/utils/generic.py
GANDLF/utils/handle_collisions.py
GANDLF/utils/imaging.py
GANDLF/utils/modelbase.py
GANDLF/utils/modelio.py
GANDLF/utils/parameter_processing.py
GANDLF/utils/tensor.py
GANDLF/utils/write_parse.py