.dockerignore
CODE_OF_CONDUCT.md
CONTRIBUTING.md
Dockerfile-CPU
Dockerfile-CUDA11.6
Dockerfile-ROCm
HISTORY.md
LICENSE
MANIFEST.in
README.md
SECURITY.md
gandlf_anonymizer
gandlf_collectStats
gandlf_configGenerator
gandlf_constructCSV
gandlf_deploy
gandlf_generateMetrics
gandlf_optimizeModel
gandlf_patchMiner
gandlf_preprocess
gandlf_recoverConfig
gandlf_run
gandlf_verifyInstall
setup.py
GANDLF/__init__.py
GANDLF/inference_manager.py
GANDLF/logger.py
GANDLF/parseConfig.py
GANDLF/training_manager.py
GANDLF/version.py
GANDLF.egg-info/PKG-INFO
GANDLF.egg-info/SOURCES.txt
GANDLF.egg-info/dependency_links.txt
GANDLF.egg-info/not-zip-safe
GANDLF.egg-info/requires.txt
GANDLF.egg-info/top_level.txt
GANDLF/../.dockerignore
GANDLF/../Dockerfile-CPU
GANDLF/../Dockerfile-CUDA11.6
GANDLF/../Dockerfile-ROCm
GANDLF/../MANIFEST.in
GANDLF/../gandlf_anonymizer
GANDLF/../gandlf_collectStats
GANDLF/../gandlf_configGenerator
GANDLF/../gandlf_constructCSV
GANDLF/../gandlf_deploy
GANDLF/../gandlf_generateMetrics
GANDLF/../gandlf_optimizeModel
GANDLF/../gandlf_patchMiner
GANDLF/../gandlf_preprocess
GANDLF/../gandlf_recoverConfig
GANDLF/../gandlf_run
GANDLF/../gandlf_verifyInstall
GANDLF/../pyproject.toml
GANDLF/../setup.py
GANDLF/anonymize/__init__.py
GANDLF/anonymize/convert_to_nifti.py
GANDLF/cli/__init__.py
GANDLF/cli/config_generator.py
GANDLF/cli/deploy.py
GANDLF/cli/generate_metrics.py
GANDLF/cli/main_run.py
GANDLF/cli/patch_extraction.py
GANDLF/cli/post_training_model_optimization.py
GANDLF/cli/preprocess_and_save.py
GANDLF/cli/recover_config.py
GANDLF/compute/__init__.py
GANDLF/compute/forward_pass.py
GANDLF/compute/generic.py
GANDLF/compute/inference_loop.py
GANDLF/compute/loss_and_metric.py
GANDLF/compute/step.py
GANDLF/compute/training_loop.py
GANDLF/data/ImagesFromDataFrame.py
GANDLF/data/__init__.py
GANDLF/data/inference_dataloader_histopath.py
GANDLF/data/augmentation/__init__.py
GANDLF/data/augmentation/blur_enhanced.py
GANDLF/data/augmentation/noise_enhanced.py
GANDLF/data/augmentation/rgb_augs.py
GANDLF/data/augmentation/rotations.py
GANDLF/data/augmentation/wrap_torchio.py
GANDLF/data/patch_miner/__init__.py
GANDLF/data/patch_miner/opm/__init__.py
GANDLF/data/patch_miner/opm/patch.py
GANDLF/data/patch_miner/opm/patch_manager.py
GANDLF/data/patch_miner/opm/utils.py
GANDLF/data/post_process/__init__.py
GANDLF/data/post_process/morphology.py
GANDLF/data/post_process/tensor.py
GANDLF/data/preprocessing/__init__.py
GANDLF/data/preprocessing/crop_zero_planes.py
GANDLF/data/preprocessing/non_zero_normalize.py
GANDLF/data/preprocessing/normalize_rgb.py
GANDLF/data/preprocessing/resample_minimum.py
GANDLF/data/preprocessing/rgb_conversion.py
GANDLF/data/preprocessing/threshold_and_clip.py
GANDLF/data/preprocessing/template_matching/__init__.py
GANDLF/data/preprocessing/template_matching/base.py
GANDLF/data/preprocessing/template_matching/histogram_matching.py
GANDLF/data/preprocessing/template_matching/stain_extractors.py
GANDLF/data/preprocessing/template_matching/stain_normalizer.py
GANDLF/data/preprocessing/template_matching/utils.py
GANDLF/grad_clipping/__init__.py
GANDLF/grad_clipping/adaptive_gradient_clipping.py
GANDLF/grad_clipping/clip_gradients.py
GANDLF/grad_clipping/grad_scaler.py
GANDLF/losses/__init__.py
GANDLF/losses/hybrid.py
GANDLF/losses/regression.py
GANDLF/losses/segmentation.py
GANDLF/metrics/__init__.py
GANDLF/metrics/classification.py
GANDLF/metrics/generic.py
GANDLF/metrics/regression.py
GANDLF/metrics/segmentation.py
GANDLF/models/MSDNet.py
GANDLF/models/__init__.py
GANDLF/models/brain_age.py
GANDLF/models/deep_unet.py
GANDLF/models/densenet.py
GANDLF/models/efficientnet.py
GANDLF/models/fcn.py
GANDLF/models/imagenet_unet.py
GANDLF/models/imagenet_vgg.py
GANDLF/models/light_unet.py
GANDLF/models/light_unet_multilayer.py
GANDLF/models/modelBase.py
GANDLF/models/resnet.py
GANDLF/models/sdnet.py
GANDLF/models/transunet.py
GANDLF/models/uinc.py
GANDLF/models/unet.py
GANDLF/models/unet_multilayer.py
GANDLF/models/unetr.py
GANDLF/models/vgg.py
GANDLF/models/seg_modules/DecodingModule.py
GANDLF/models/seg_modules/DownsamplingModule.py
GANDLF/models/seg_modules/EncodingModule.py
GANDLF/models/seg_modules/FCNUpsamplingModule.py
GANDLF/models/seg_modules/IncConv.py
GANDLF/models/seg_modules/IncDownsamplingModule.py
GANDLF/models/seg_modules/IncDropout.py
GANDLF/models/seg_modules/IncUpsamplingModule.py
GANDLF/models/seg_modules/InceptionModule.py
GANDLF/models/seg_modules/InitialConv.py
GANDLF/models/seg_modules/Interpolate.py
GANDLF/models/seg_modules/ResNetModule.py
GANDLF/models/seg_modules/UpsamplingModule.py
GANDLF/models/seg_modules/__init__.py
GANDLF/models/seg_modules/add_conv_block.py
GANDLF/models/seg_modules/add_downsample_conv_block.py
GANDLF/models/seg_modules/average_pool.py
GANDLF/models/seg_modules/out_conv.py
GANDLF/optimizers/__init__.py
GANDLF/optimizers/wrap_torch.py
GANDLF/schedulers/__init__.py
GANDLF/schedulers/wrap_torch.py
GANDLF/utils/__init__.py
GANDLF/utils/generic.py
GANDLF/utils/handle_collisions.py
GANDLF/utils/imaging.py
GANDLF/utils/modelbase.py
GANDLF/utils/modelio.py
GANDLF/utils/parameter_processing.py
GANDLF/utils/tensor.py
GANDLF/utils/write_parse.py