Metadata-Version: 2.0
Name: galaxy-lib
Version: 17.1.2
Summary: Subset of Galaxy (http://galaxyproject.org/) core code base designed to be used a library.
Home-page: https://github.com/galaxyproject/galaxy-lib
Author: Galaxy Project and Community
Author-email: jmchilton@gmail.com
License: AFL
Keywords: galaxy
Platform: UNKNOWN
Classifier: Development Status :: 5 - Production/Stable
Classifier: Intended Audience :: Developers
Classifier: Environment :: Console
Classifier: License :: OSI Approved :: Academic Free License (AFL)
Classifier: Operating System :: POSIX
Classifier: Topic :: Software Development
Classifier: Topic :: Software Development :: Code Generators
Classifier: Topic :: Software Development :: Testing
Classifier: Natural Language :: English
Classifier: Programming Language :: Python :: 2
Classifier: Programming Language :: Python :: 2.7
Classifier: Programming Language :: Python :: 3.4
Classifier: Programming Language :: Python :: 3.5
Requires-Dist: six (>=1.9.0)
Requires-Dist: docutils
Requires-Dist: pyyaml

.. image:: https://readthedocs.org/projects/pip/badge/?version=latest
   :target: https://galaxy-lib.readthedocs.org

.. image:: https://badge.fury.io/py/galaxy-lib.svg
   :target: https://pypi.python.org/pypi/galaxy-lib/

.. image:: https://travis-ci.org/galaxyproject/galaxy-lib.png?branch=master
   :target: https://travis-ci.org/galaxyproject/galaxy-lib

.. image:: https://coveralls.io/repos/galaxyproject/galaxy-lib/badge.svg?branch=master
   :target: https://coveralls.io/r/galaxyproject/galaxy-lib?branch=master


A small subset of the Galaxy_ project for reuse outside the core. This subset has minimal dependencies and should be Python 3 compatible.

* Free software: Academic Free License version 3.0
* Documentation: https://galaxy-lib.readthedocs.org.
* Code: https://github.com/galaxyproject/galaxy-lib


.. _Galaxy: http://galaxyproject.org/
.. _GitHub: https://github.com/
.. _Docker: https://www.docker.com/
.. _Homebrew: http://brew.sh/
.. _linuxbrew: https://github.com/Homebrew/linuxbrew
.. _Vagrant: https://www.vagrantup.com/
.. _Travis CI: http://travis-ci.org/
.. _`tools-devteam`: https://github.com/galaxyproject/tools-devteam
.. _`tools-iuc`: https://github.com/galaxyproject/tools-iuc
.. _Publishing to the Tool Shed: http://planemo.readthedocs.org/en/latest/publishing.html
.. _Common Workfow Language: http://common-workflow-language.github.io




History
-------

.. to_doc

---------------------
17.1.2 (2017-01-23)
---------------------

* Bring in the last of the Galaxy dev changes before branch of release_17.01.
* Improvements to mulled testing thanks to @mvdbeek.

---------------------
17.1.1 (2016-12-14)
---------------------

* Revert changes to shell command execution in Galaxy that had unintended consequences for Planemo.    

---------------------
17.1.0 (2016-12-12)
---------------------

* Improved mulled logging thanks to @bgruening.
* Bring in the latest Galaxy dev changes.

---------------------
16.10.10 (2016-10-24)
---------------------

* Fix mulled package data fetching for Mac OS X (thanks to @dannon).

---------------------
16.10.9 (2016-10-21)
---------------------

* Small fixes including to reflect mulled name on quay.io changed to biocontainers.

---------------------
16.10.8 (2016-10-10)
---------------------

* More mulled enhancements and bug fixes thanks to @bgruening and @daler.

---------------------
16.10.7 (2016-10-08)
---------------------

* More mulled enhancements and bug fixes thanks to @bgruening.
* Fix bioconda support by adding conda-forge to list of default channels.

---------------------
16.10.6 (2016-10-07)
---------------------

* More mulled enhancements thanks to @bgruening.

---------------------
16.10.5 (2016-10-04)
---------------------

* Some docstring cleanup and minor tweaks to Conda support for downstream planemo mulled work.

---------------------
16.10.4 (2016-10-03)
---------------------

* More mulled fixes and enhancements.

---------------------
16.10.3 (2016-10-02)
---------------------

* Small mulled and Conda related fix and enhancements.

---------------------
16.10.2 (2016-09-30)
---------------------

* Fix setup.py for features in 16.10.1.

---------------------
16.10.1 (2016-09-29)
---------------------

* Updates for recents changes to Galaxy and initial mulled scripts and container resolver.

---------------------
16.10.0 (2016-08-31)
---------------------

* Updates for recent changes to Galaxy.

---------------------
16.7.10 (2016-08-04)
---------------------

* Updates for recent change to Galaxy.    

---------------------
16.7.9 (2016-06-13)
---------------------

* Updates for recent changes to Galaxy and cwltool.

---------------------
16.7.8 (2016-06-05)
---------------------

* Updates to include Galaxy library for verifying test outputs
  and the latest dev changes to Galaxy.

---------------------
16.7.7 (2016-05-23)
---------------------

* Fixes to CWL and Docker libraries for Planemo.

---------------------
16.7.6 (2016-05-11)
---------------------

* Fixes to cwl processing for Planemo.

---------------------
16.7.5 (2016-05-11)
---------------------

* Updates to cwl processing for Planemo.

---------------------
16.7.4 (2016-05-10)
---------------------

* Updates to cwl processing for Planemo.

---------------------
16.7.3 (2016-05-07)
---------------------

* Updates to cwltool_deps for Planemo.

---------------------
16.7.2 (2016-05-06)
---------------------

* Updates to tool parsing and linting for Planemo.

---------------------
16.7.1 (2016-05-02)
---------------------

* Update against the latest development branch of Galaxy.

---------------------
16.7.0 (2016-04-21)
---------------------

* Update against the latest development branch of Galaxy.

---------------------
16.4.1 (2016-04-08)
---------------------

* Update against the latest development branch of Galaxy.

---------------------
16.4.0 (2016-02-15)
---------------------

* Update against the latest development branch of Galaxy.

---------------------
16.1.9 (2016-01-14)
---------------------

* Fix a bug in the source distribution of galaxy-lib.

---------------------
16.1.8 (2016-01-12)
---------------------

* Update against Galaxy's release_16.01 branch.

---------------------
16.1.7 (2016-01-03)
---------------------

* Update against Galaxy's dev branch - including conda updates,
  dependency resolution changes, and toolbox updates.

---------------------
16.1.6 (2015-12-28)
---------------------

* Additional fixes to setup.py and updates for recent changes to
  Galaxy's dev branch.

---------------------
16.1.5 (2015-12-22)
---------------------

* Fix another bug that was preventing dependency resolution from
  working in Pulsar.

---------------------
16.1.4 (2015-12-22)
---------------------

* Another setup.py fix for job metrics module.

---------------------
16.1.3 (2015-12-22)
---------------------

* Python 3 fixes and updates for recent Galaxy dev commits.

---------------------
16.1.2 (2015-12-21)
---------------------

* Fix for missing galaxy.tools.parser package in setup.py.
* Fix LICENSE in repository.

---------------------
16.1.1 (2015-12-20)
---------------------

* Fix small issues with dependencies, naming, and versioning with first release.

---------------------
16.1.0 (2015-12-20)
---------------------

* Setup project.

.. _bioblend: https://github.com/galaxyproject/bioblend/
.. _XSD: http://www.w3schools.com/schema/
.. _lxml: http://lxml.de/
.. _xmllint: http://xmlsoft.org/xmllint.html
.. _nose: https://nose.readthedocs.org/en/latest/


