CMakeLists.txt
COPYING
MANIFEST.in
README.rst
configure
setup.py
setup.py.in
doc/Makefile
doc/conf.py
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doc/fwdpp.doxygen
doc/fwdpy11.doxygen
doc/index.rst
doc/_build/html/_images/efficient_timeseries_example.png
doc/_build/html/_images/localadaptation.png
doc/_build/html/_images/mean_genetic_values_over_time.png
doc/_build/html/_images/migtest.png
doc/_build/html/_images/moments_IM_gamma_minus_5.png
doc/_build/html/_images/moments_IM_neutral.png
doc/_build/html/_images/pi_over_time.png
doc/_build/html/_images/sfs_example.png
doc/_build/html/_images/structures.png
doc/_build/html/_images/tables.png
doc/_build/html/_images/tree.png
doc/_build/html/_static/file.png
doc/_build/html/_static/minus.png
doc/_build/html/_static/plus.png
doc/examples/IM.rst
doc/examples/bgs.rst
doc/examples/gss.rst
doc/examples/localadaptation.rst
doc/examples/migtest.rst
doc/examples/recorder.rst
doc/examples/snowdrift.rst
doc/images/localadaptation.png
doc/images/migtest.png
doc/images/moments_IM_gamma_minus_5.png
doc/images/moments_IM_neutral.png
doc/images/structures.png
doc/images/tables.png
doc/images/tree.png
doc/misc/changelog.rst
doc/misc/deprecated.rst
doc/misc/developers.rst
doc/misc/pubs.rst
doc/misc/references.rst
doc/misc/todo.rst
doc/misc/upgrade_path.rst
doc/pages/0000a_anintroexample.rst
doc/pages/0000a_objectoverview.rst
doc/pages/0000a_tskit_interchange.rst
doc/pages/0000a_working_with_genotypes_trees.rst
doc/pages/datamatrix.rst
doc/pages/definitions.rst
doc/pages/demographic_models.rst
doc/pages/demographydebugger.rst
doc/pages/functions.rst
doc/pages/genetic_values.rst
doc/pages/gvalue_to_fitness.rst
doc/pages/gvaluenoise.rst
doc/pages/model_params.rst
doc/pages/mutation.rst
doc/pages/recombination.rst
doc/pages/recorders.rst
doc/pages/regiontypes.rst
doc/pages/softselection.rst
doc/pages/tablefs.rst
doc/pages/tsoverview.rst
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doc/pages/tstypes.rst
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doc/savefig/efficient_timeseries_example.png
doc/savefig/mean_genetic_values_over_time.png
doc/savefig/pi_over_time.png
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examples/COPYING
examples/README.rst
examples/bgs/bgs.py
examples/discrete_demography/IM.py
examples/discrete_demography/localadaptation.py
examples/discrete_demography/migtest.py
examples/gss/DiploidPopulationGSSmo.py
examples/gss/Makefile
examples/gss/README.rst
examples/gss/compare.py
examples/gss/iterate_variants_in_tree_sequences.py
examples/gss/plot_genetic_values_from_tree_sequences.py
examples/gss/plotstats.R
examples/plugin/CMakeLists.txt
examples/plugin/gvalue_recorder.cc
examples/plugin/test_plugin.py
fwdpy11/CMakeLists.txt
fwdpy11/__init__.py
fwdpy11/__main__.py
fwdpy11/_demography.py
fwdpy11/_dev.py
fwdpy11/_evolve_genomes.py
fwdpy11/_evolvets.py
fwdpy11/_version.py
fwdpy11/ezparams.py
fwdpy11.egg-info/PKG-INFO
fwdpy11.egg-info/SOURCES.txt
fwdpy11.egg-info/dependency_links.txt
fwdpy11.egg-info/not-zip-safe
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fwdpy11.egg-info/top_level.txt
fwdpy11/_monkeypatch/__init__.py
fwdpy11/_monkeypatch/_data_matrix.py
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fwdpy11/_types/__init__.py
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fwdpy11/_types/model_params.py
fwdpy11/demographic_models/IM.py
fwdpy11/demographic_models/__init__.py
fwdpy11/headers/fwdpp/examples/K_linked_regions_extensions.cc
fwdpy11/headers/fwdpp/examples/calculate_fitnesses.hpp
fwdpy11/headers/fwdpp/examples/common_ind.hpp
fwdpy11/headers/fwdpp/examples/confirm_mutation_counts.hpp
fwdpy11/headers/fwdpp/examples/custom_diploid.cc
fwdpy11/headers/fwdpp/examples/custom_mutation.cc
fwdpy11/headers/fwdpp/examples/diploid_fixed_sh_ind.cc
fwdpy11/headers/fwdpp/examples/diploid_ind.cc
fwdpy11/headers/fwdpp/examples/evolve_generation_ts.hpp
fwdpy11/headers/fwdpp/examples/juvenile_migration.cc
fwdpy11/headers/fwdpp/examples/load_table_collection.cc
fwdpy11/headers/fwdpp/examples/simplify_tables.hpp
fwdpy11/headers/fwdpp/examples/spatialts.cc
fwdpy11/headers/fwdpp/examples/tree_sequence_examples_common.cc
fwdpy11/headers/fwdpp/examples/tree_sequence_examples_common.hpp
fwdpy11/headers/fwdpp/examples/tree_sequence_examples_types.hpp
fwdpy11/headers/fwdpp/examples/wfevolvets.cc
fwdpy11/headers/fwdpp/examples/wfevolvets.hpp
fwdpy11/headers/fwdpp/examples/wfts_integration_test.cc
fwdpy11/headers/fwdpp/examples/wfts_overlapping_generations.cc
fwdpy11/headers/fwdpp/examples/wfts_overlapping_generations_dynamic_indexing.cc
fwdpy11/headers/fwdpp/examples/wfts_overlapping_generations_dynamic_indexing_with_mutation.cc
fwdpy11/headers/fwdpp/fwdpp/GSLrng_t.hpp
fwdpy11/headers/fwdpp/fwdpp/data_matrix.hpp
fwdpy11/headers/fwdpp/fwdpp/debug.hpp
fwdpy11/headers/fwdpp/fwdpp/diploid.hh
fwdpy11/headers/fwdpp/fwdpp/diploid_population.hpp
fwdpy11/headers/fwdpp/fwdpp/fitness_models.hpp
fwdpy11/headers/fwdpp/fwdpp/forward_types.hpp
fwdpy11/headers/fwdpp/fwdpp/forward_types_serialization.hpp
fwdpy11/headers/fwdpp/fwdpp/fwd_functional.hpp
fwdpy11/headers/fwdpp/fwdpp/gsl_discrete.hpp
fwdpy11/headers/fwdpp/fwdpp/insertion_policies.hpp
fwdpy11/headers/fwdpp/fwdpp/mutate_recombine.hpp
fwdpy11/headers/fwdpp/fwdpp/named_type.hpp
fwdpy11/headers/fwdpp/fwdpp/popgenmut.hpp
fwdpy11/headers/fwdpp/fwdpp/recbinder.hpp
fwdpy11/headers/fwdpp/fwdpp/sample_diploid.hpp
fwdpy11/headers/fwdpp/fwdpp/sample_diploid.tcc
fwdpy11/headers/fwdpp/fwdpp/sampling_functions.hpp
fwdpy11/headers/fwdpp/fwdpp/simparams.hpp
fwdpy11/headers/fwdpp/fwdpp/type_traits.hpp
fwdpy11/headers/fwdpp/fwdpp/util.hpp
fwdpy11/headers/fwdpp/fwdpp/version.hpp
fwdpy11/headers/fwdpp/fwdpp/wrapped_range.hpp
fwdpy11/headers/fwdpp/fwdpp/algorithm/compact_mutations.hpp
fwdpy11/headers/fwdpp/fwdpp/extensions/callbacks.hpp
fwdpy11/headers/fwdpp/fwdpp/extensions/regions.hpp
fwdpy11/headers/fwdpp/fwdpp/genetic_map/binomial_interval.hpp
fwdpy11/headers/fwdpp/fwdpp/genetic_map/binomial_point.hpp
fwdpy11/headers/fwdpp/fwdpp/genetic_map/fixed_number_crossovers.hpp
fwdpy11/headers/fwdpp/fwdpp/genetic_map/genetic_map.hpp
fwdpy11/headers/fwdpp/fwdpp/genetic_map/genetic_map_unit.hpp
fwdpy11/headers/fwdpp/fwdpp/genetic_map/poisson_interval.hpp
fwdpy11/headers/fwdpp/fwdpp/genetic_map/poisson_point.hpp
fwdpy11/headers/fwdpp/fwdpp/gsl/deleter.hpp
fwdpy11/headers/fwdpp/fwdpp/gsl/tags.hpp
fwdpy11/headers/fwdpp/fwdpp/internal/data_matrix_details.hpp
fwdpy11/headers/fwdpp/fwdpp/internal/debug_details.hpp
fwdpy11/headers/fwdpp/fwdpp/internal/haploid_genome_cleaner.hpp
fwdpy11/headers/fwdpp/fwdpp/internal/mutation_internal.hpp
fwdpy11/headers/fwdpp/fwdpp/internal/rec_gamete_updater.hpp
fwdpy11/headers/fwdpp/fwdpp/internal/recombination_common.hpp
fwdpy11/headers/fwdpp/fwdpp/internal/sample_diploid_helpers.hpp
fwdpy11/headers/fwdpp/fwdpp/internal/sampling_functions_details.hpp
fwdpy11/headers/fwdpp/fwdpp/internal/type_traits.hpp
fwdpy11/headers/fwdpp/fwdpp/internal/util.hpp
fwdpy11/headers/fwdpp/fwdpp/internal/void_t.hpp
fwdpy11/headers/fwdpp/fwdpp/io/diploid.hpp
fwdpy11/headers/fwdpp/fwdpp/io/haploid_genome.hpp
fwdpy11/headers/fwdpp/fwdpp/io/mutation.hpp
fwdpy11/headers/fwdpp/fwdpp/io/scalar_serialization.hpp
fwdpy11/headers/fwdpp/fwdpp/io/serialize_population.hpp
fwdpy11/headers/fwdpp/fwdpp/io/detail/serialize_population.hpp
fwdpy11/headers/fwdpp/fwdpp/meta/always_false.hpp
fwdpy11/headers/fwdpp/fwdpp/poptypes/diploid_population.hpp
fwdpy11/headers/fwdpp/fwdpp/poptypes/popbase.hpp
fwdpy11/headers/fwdpp/fwdpp/poptypes/tags.hpp
fwdpy11/headers/fwdpp/fwdpp/simfunctions/recycling.hpp
fwdpy11/headers/fwdpp/fwdpp/sugar/add_mutation.hpp
fwdpy11/headers/fwdpp/fwdpp/sugar/change_neutral.hpp
fwdpy11/headers/fwdpp/fwdpp/tags/tags.hpp
fwdpy11/headers/fwdpp/fwdpp/ts/count_mutations.hpp
fwdpy11/headers/fwdpp/fwdpp/ts/decapitate.hpp
fwdpy11/headers/fwdpp/fwdpp/ts/definitions.hpp
fwdpy11/headers/fwdpp/fwdpp/ts/edge.hpp
fwdpy11/headers/fwdpp/fwdpp/ts/exceptions.hpp
fwdpy11/headers/fwdpp/fwdpp/ts/generate_data_matrix.hpp
fwdpy11/headers/fwdpp/fwdpp/ts/generate_offspring.hpp
fwdpy11/headers/fwdpp/fwdpp/ts/get_parent_ids.hpp
fwdpy11/headers/fwdpp/fwdpp/ts/indexed_edge.hpp
fwdpy11/headers/fwdpp/fwdpp/ts/marginal_tree.hpp
fwdpy11/headers/fwdpp/fwdpp/ts/marginal_tree_functions.hpp
fwdpy11/headers/fwdpp/fwdpp/ts/mark_multiple_roots.hpp
fwdpy11/headers/fwdpp/fwdpp/ts/mutate_tables.hpp
fwdpy11/headers/fwdpp/fwdpp/ts/mutation_record.hpp
fwdpy11/headers/fwdpp/fwdpp/ts/mutation_tools.hpp
fwdpy11/headers/fwdpp/fwdpp/ts/node.hpp
fwdpy11/headers/fwdpp/fwdpp/ts/recycling.hpp
fwdpy11/headers/fwdpp/fwdpp/ts/remove_fixations_from_gametes.hpp
fwdpy11/headers/fwdpp/fwdpp/ts/serialization.hpp
fwdpy11/headers/fwdpp/fwdpp/ts/serialization_version.hpp
fwdpy11/headers/fwdpp/fwdpp/ts/site.hpp
fwdpy11/headers/fwdpp/fwdpp/ts/site_visitor.hpp
fwdpy11/headers/fwdpp/fwdpp/ts/table_collection.hpp
fwdpy11/headers/fwdpp/fwdpp/ts/table_simplifier.hpp
fwdpy11/headers/fwdpp/fwdpp/ts/table_types.hpp
fwdpy11/headers/fwdpp/fwdpp/ts/tree_visitor.hpp
fwdpy11/headers/fwdpp/fwdpp/ts/visit_sites.hpp
fwdpy11/headers/fwdpp/fwdpp/ts/detail/advance_marginal_tree_policies.hpp
fwdpy11/headers/fwdpp/fwdpp/ts/detail/generate_data_matrix_details.hpp
fwdpy11/headers/fwdpp/fwdpp/ts/marginal_tree_functions/children.hpp
fwdpy11/headers/fwdpp/fwdpp/ts/marginal_tree_functions/node_traversal_order.hpp
fwdpy11/headers/fwdpp/fwdpp/ts/marginal_tree_functions/node_traversal_preorder.hpp
fwdpy11/headers/fwdpp/fwdpp/ts/marginal_tree_functions/nodes.hpp
fwdpy11/headers/fwdpp/fwdpp/ts/marginal_tree_functions/roots.hpp
fwdpy11/headers/fwdpp/fwdpp/ts/marginal_tree_functions/samples.hpp
fwdpy11/headers/fwdpp/fwdpp/ts/marginal_tree_functions/statistics.hpp
fwdpy11/headers/fwdpp/fwdpp/ts/simplification/ancestry_list.hpp
fwdpy11/headers/fwdpp/fwdpp/ts/simplification/segment.hpp
fwdpy11/headers/fwdpp/fwdpp/util/abstract_cloneable.hpp
fwdpy11/headers/fwdpp/src/fwdppConfig.cc
fwdpy11/headers/fwdpp/testsuite/fixtures/fwdpp_fixtures.hpp
fwdpy11/headers/fwdpp/testsuite/fixtures/rng_fixture.hpp
fwdpy11/headers/fwdpp/testsuite/fixtures/sugar_fixtures.cc
fwdpy11/headers/fwdpp/testsuite/fixtures/sugar_fixtures.hpp
fwdpy11/headers/fwdpp/testsuite/integration/extensions_integration_tests.cc
fwdpy11/headers/fwdpp/testsuite/integration/extensions_regionsIntegrationTest.cc
fwdpy11/headers/fwdpp/testsuite/integration/sugar_integration_tests.cc
fwdpy11/headers/fwdpp/testsuite/integration/sugar_singlepopTest.cc
fwdpy11/headers/fwdpp/testsuite/integration/sugar_singlepop_custom_diploidTest.cc
fwdpy11/headers/fwdpp/testsuite/tree_sequences/empty_table_collection.hpp
fwdpy11/headers/fwdpp/testsuite/tree_sequences/independent_implementations.cc
fwdpy11/headers/fwdpp/testsuite/tree_sequences/independent_implementations.hpp
fwdpy11/headers/fwdpp/testsuite/tree_sequences/preorder_adl.hpp
fwdpy11/headers/fwdpp/testsuite/tree_sequences/simple_table_collection.hpp
fwdpy11/headers/fwdpp/testsuite/tree_sequences/simple_table_collection_infinite_sites.hpp
fwdpy11/headers/fwdpp/testsuite/tree_sequences/simple_table_collection_polytomy.hpp
fwdpy11/headers/fwdpp/testsuite/tree_sequences/test_ancestry_list.cc
fwdpy11/headers/fwdpp/testsuite/tree_sequences/test_decapitate.cc
fwdpy11/headers/fwdpp/testsuite/tree_sequences/test_generate_data_matrix.cc
fwdpy11/headers/fwdpp/testsuite/tree_sequences/test_generate_offspring.cc
fwdpy11/headers/fwdpp/testsuite/tree_sequences/test_marginal_tree.cc
fwdpy11/headers/fwdpp/testsuite/tree_sequences/test_marginal_tree_statistics.cc
fwdpy11/headers/fwdpp/testsuite/tree_sequences/test_node_children_traversal.cc
fwdpy11/headers/fwdpp/testsuite/tree_sequences/test_node_traversal_order_adl.cc
fwdpy11/headers/fwdpp/testsuite/tree_sequences/test_preorder_node_traversal.cc
fwdpy11/headers/fwdpp/testsuite/tree_sequences/test_root_traversal.cc
fwdpy11/headers/fwdpp/testsuite/tree_sequences/test_sample_traversal.cc
fwdpy11/headers/fwdpp/testsuite/tree_sequences/test_site_visitor.cc
fwdpy11/headers/fwdpp/testsuite/tree_sequences/test_table_collection.cc
fwdpy11/headers/fwdpp/testsuite/tree_sequences/test_tree_visitor.cc
fwdpy11/headers/fwdpp/testsuite/tree_sequences/test_visit_sites.cc
fwdpy11/headers/fwdpp/testsuite/tree_sequences/tree_sequence_tests.cc
fwdpy11/headers/fwdpp/testsuite/unit/extensions_callbacksTest.cc
fwdpy11/headers/fwdpp/testsuite/unit/extensions_regionsTest.cc
fwdpy11/headers/fwdpp/testsuite/unit/extensions_unit_test.cc
fwdpy11/headers/fwdpp/testsuite/unit/fwdpp_unit_tests.cc
fwdpy11/headers/fwdpp/testsuite/unit/gameteTest.cc
fwdpy11/headers/fwdpp/testsuite/unit/gamete_cleanerTest.cc
fwdpy11/headers/fwdpp/testsuite/unit/genetic_map_tests.cc
fwdpy11/headers/fwdpp/testsuite/unit/mutateTest.cc
fwdpy11/headers/fwdpp/testsuite/unit/serializationTest.cc
fwdpy11/headers/fwdpp/testsuite/unit/siteDepFitnessTest.cc
fwdpy11/headers/fwdpp/testsuite/unit/sugar_GSLrngTest.cc
fwdpy11/headers/fwdpp/testsuite/unit/sugar_add_mutationTest.cc
fwdpy11/headers/fwdpp/testsuite/unit/sugar_change_neutralTest.cc
fwdpy11/headers/fwdpp/testsuite/unit/sugar_construct_pops.cc
fwdpy11/headers/fwdpp/testsuite/unit/sugar_popgenmut.cc
fwdpy11/headers/fwdpp/testsuite/unit/sugar_unit_tests.cc
fwdpy11/headers/fwdpp/testsuite/unit/test_genetic_map.cc
fwdpy11/headers/fwdpp/testsuite/unit/test_mutate_recombine.cc
fwdpy11/headers/fwdpp/testsuite/unit/test_recombination.cc
fwdpy11/headers/fwdpp/testsuite/unit/test_sampling.cc
fwdpy11/headers/fwdpp/testsuite/unit/test_simparams.cc
fwdpy11/headers/fwdpp/testsuite/unit/test_wrapped_range.cc
fwdpy11/headers/fwdpp/testsuite/unit/type_traitsTest.cc
fwdpy11/headers/fwdpp/testsuite/unit/utilTest.cc
fwdpy11/headers/fwdpp/testsuite/util/custom_dip.hpp
fwdpy11/headers/fwdpp/testsuite/util/quick_evolve_sugar.hpp
fwdpy11/headers/fwdpy11/rng.hpp
fwdpy11/headers/fwdpy11/samplers.hpp
fwdpy11/headers/fwdpy11/serialization.hpp
fwdpy11/headers/fwdpy11/sim_functions.hpp
fwdpy11/headers/fwdpy11/discrete_demography/DiscreteDemography.hpp
fwdpy11/headers/fwdpy11/discrete_demography/MassMigration.hpp
fwdpy11/headers/fwdpy11/discrete_demography/MigrationMatrix.hpp
fwdpy11/headers/fwdpy11/discrete_demography/SetDemeSize.hpp
fwdpy11/headers/fwdpy11/discrete_demography/SetExponentialGrowth.hpp
fwdpy11/headers/fwdpy11/discrete_demography/SetMigrationRates.hpp
fwdpy11/headers/fwdpy11/discrete_demography/SetSelfingRate.hpp
fwdpy11/headers/fwdpy11/discrete_demography/constants.hpp
fwdpy11/headers/fwdpy11/discrete_demography/exceptions.hpp
fwdpy11/headers/fwdpy11/discrete_demography/simulation.hpp
fwdpy11/headers/fwdpy11/discrete_demography/simulation/apply_mass_migrations.hpp
fwdpy11/headers/fwdpy11/discrete_demography/simulation/build_migration_lookup.hpp
fwdpy11/headers/fwdpy11/discrete_demography/simulation/deme_properties.hpp
fwdpy11/headers/fwdpy11/discrete_demography/simulation/deme_property_types.hpp
fwdpy11/headers/fwdpy11/discrete_demography/simulation/demographic_model_state.hpp
fwdpy11/headers/fwdpy11/discrete_demography/simulation/detail.hpp
fwdpy11/headers/fwdpy11/discrete_demography/simulation/functions.hpp
fwdpy11/headers/fwdpy11/discrete_demography/simulation/get_max_number_of_demes.hpp
fwdpy11/headers/fwdpy11/discrete_demography/simulation/migration_lookup.hpp
fwdpy11/headers/fwdpy11/discrete_demography/simulation/multideme_fitness_lookups.hpp
fwdpy11/headers/fwdpy11/discrete_demography/simulation/pick_parents.hpp
fwdpy11/headers/fwdpy11/discrete_demography/simulation/set_model_state.hpp
fwdpy11/headers/fwdpy11/discrete_demography/simulation/update_demography_manager.hpp
fwdpy11/headers/fwdpy11/evolve/DiploidPopulation_generation.hpp
fwdpy11/headers/fwdpy11/evolvets/SampleRecorder.hpp
fwdpy11/headers/fwdpy11/evolvets/evolve_generation_ts.hpp
fwdpy11/headers/fwdpy11/evolvets/recorders.hpp
fwdpy11/headers/fwdpy11/evolvets/sample_recorder_types.hpp
fwdpy11/headers/fwdpy11/evolvets/simplify_tables.hpp
fwdpy11/headers/fwdpy11/genetic_values/DiploidAdditive.hpp
fwdpy11/headers/fwdpy11/genetic_values/DiploidGBR.hpp
fwdpy11/headers/fwdpy11/genetic_values/DiploidMult.hpp
fwdpy11/headers/fwdpy11/genetic_values/DiploidMultivariateEffectsStrictAdditive.hpp
fwdpy11/headers/fwdpy11/genetic_values/DiploidPopulationGeneticValue.hpp
fwdpy11/headers/fwdpy11/genetic_values/DiploidPopulationGeneticValueWithMapping.hpp
fwdpy11/headers/fwdpy11/genetic_values/DiploidPopulationMultivariateGeneticValueWithMapping.hpp
fwdpy11/headers/fwdpy11/genetic_values/GeneticValueToFitness.hpp
fwdpy11/headers/fwdpy11/genetic_values/MultivariateGSS.hpp
fwdpy11/headers/fwdpy11/genetic_values/MultivariateGSSmo.hpp
fwdpy11/headers/fwdpy11/genetic_values/MultivariateGeneticValueToFitnessMap.hpp
fwdpy11/headers/fwdpy11/genetic_values/default_update.hpp
fwdpy11/headers/fwdpy11/genetic_values/dgvalue_pointer_vector.hpp
fwdpy11/headers/fwdpy11/genetic_values/noise.hpp
fwdpy11/headers/fwdpy11/genetic_values/details/GBR.hpp
fwdpy11/headers/fwdpy11/genetic_values/details/pickle_GBR.hpp
fwdpy11/headers/fwdpy11/genetic_values/details/pickle_additive.hpp
fwdpy11/headers/fwdpy11/genetic_values/details/pickle_multiplicative.hpp
fwdpy11/headers/fwdpy11/genetic_values/fwdpp_wrappers/fwdpp_genetic_value.hpp
fwdpy11/headers/fwdpy11/gsl/gsl_error_handler_wrapper.hpp
fwdpy11/headers/fwdpy11/numpy/array.hpp
fwdpy11/headers/fwdpy11/policies/mutation.hpp
fwdpy11/headers/fwdpy11/regions/ConstantS.hpp
fwdpy11/headers/fwdpy11/regions/ExpS.hpp
fwdpy11/headers/fwdpy11/regions/GammaS.hpp
fwdpy11/headers/fwdpy11/regions/GaussianS.hpp
fwdpy11/headers/fwdpy11/regions/MultivariateGaussianEffects.hpp
fwdpy11/headers/fwdpy11/regions/MutationRegions.hpp
fwdpy11/headers/fwdpy11/regions/RecombinationRegions.hpp
fwdpy11/headers/fwdpy11/regions/Region.hpp
fwdpy11/headers/fwdpy11/regions/Sregion.hpp
fwdpy11/headers/fwdpy11/regions/UniformS.hpp
fwdpy11/headers/fwdpy11/sampling/data_matrix_functions.hpp
fwdpy11/headers/fwdpy11/serialization/Diploid.hpp
fwdpy11/headers/fwdpy11/serialization/Mutation.hpp
fwdpy11/headers/fwdpy11/serialization/backwards_compat.hpp
fwdpy11/headers/fwdpy11/serialization/diploid_metadata.hpp
fwdpy11/headers/fwdpy11/types/Diploid.hpp
fwdpy11/headers/fwdpy11/types/DiploidPopulation.hpp
fwdpy11/headers/fwdpy11/types/Mutation.hpp
fwdpy11/headers/fwdpy11/types/Population.hpp
fwdpy11/headers/fwdpy11/types/create_pops.hpp
fwdpy11/headers/fwdpy11/types/typedefs.hpp
fwdpy11/headers/fwdpy11/util/clone_cloneable.hpp
fwdpy11/headers/fwdpy11/util/convert_lists.hpp
fwdpy11/src/_fwdpy11.cc
fwdpy11/src/discrete_demography/DiscreteDemography.cc
fwdpy11/src/discrete_demography/MassMigration.cc
fwdpy11/src/discrete_demography/MigrationMatrix.cc
fwdpy11/src/discrete_demography/SetDemeSize.cc
fwdpy11/src/discrete_demography/SetExponentialGrowth.cc
fwdpy11/src/discrete_demography/SetMigrationRates.cc
fwdpy11/src/discrete_demography/SetSelfingRate.cc
fwdpy11/src/discrete_demography/exceptions.cc
fwdpy11/src/discrete_demography/init.cc
fwdpy11/src/evolve_population/cleanup_metadata.cc
fwdpy11/src/evolve_population/cleanup_metadata.hpp
fwdpy11/src/evolve_population/diploid_pop_fitness.cc
fwdpy11/src/evolve_population/diploid_pop_fitness.hpp
fwdpy11/src/evolve_population/index_and_count_mutations.cc
fwdpy11/src/evolve_population/index_and_count_mutations.hpp
fwdpy11/src/evolve_population/init.cc
fwdpy11/src/evolve_population/no_stopping.cc
fwdpy11/src/evolve_population/no_tree_sequences.cc
fwdpy11/src/evolve_population/remove_extinct_genomes.cc
fwdpy11/src/evolve_population/remove_extinct_genomes.hpp
fwdpy11/src/evolve_population/remove_extinct_mutations.cc
fwdpy11/src/evolve_population/remove_extinct_mutations.hpp
fwdpy11/src/evolve_population/track_ancestral_counts.cc
fwdpy11/src/evolve_population/track_ancestral_counts.hpp
fwdpy11/src/evolve_population/track_mutation_counts.cc
fwdpy11/src/evolve_population/track_mutation_counts.hpp
fwdpy11/src/evolve_population/util.cc
fwdpy11/src/evolve_population/util.hpp
fwdpy11/src/evolve_population/with_tree_sequences.cc
fwdpy11/src/fwdpp_functions/data_matrix_creation.cc
fwdpy11/src/fwdpp_functions/init.cc
fwdpy11/src/fwdpp_types/BinomialInterval.cc
fwdpy11/src/fwdpp_types/BinomialPoint.cc
fwdpy11/src/fwdpp_types/DataMatrix.cc
fwdpy11/src/fwdpp_types/Edge.cc
fwdpy11/src/fwdpp_types/EdgeTable.cc
fwdpy11/src/fwdpp_types/FixedCrossovers.cc
fwdpy11/src/fwdpp_types/GeneticMapUnit.cc
fwdpy11/src/fwdpp_types/HaploidGenome.cc
fwdpy11/src/fwdpp_types/IndexedEdge.cc
fwdpy11/src/fwdpp_types/MutationBase.cc
fwdpy11/src/fwdpp_types/MutationRecord.cc
fwdpy11/src/fwdpp_types/MutationTable.cc
fwdpy11/src/fwdpp_types/NULL_NODE.cc
fwdpy11/src/fwdpp_types/Node.cc
fwdpy11/src/fwdpp_types/NodeTable.cc
fwdpy11/src/fwdpp_types/PoissonInterval.cc
fwdpy11/src/fwdpp_types/PoissonPoint.cc
fwdpy11/src/fwdpp_types/Site.cc
fwdpy11/src/fwdpp_types/SiteTable.cc
fwdpy11/src/fwdpp_types/TableCollection.cc
fwdpy11/src/fwdpp_types/init.cc
fwdpy11/src/fwdpy11_functions/change_effect_size.cc
fwdpy11/src/fwdpy11_functions/init.cc
fwdpy11/src/fwdpy11_functions/sort_gamete_keys.cc
fwdpy11/src/fwdpy11_types/DiploidGenotype.cc
fwdpy11/src/fwdpy11_types/DiploidMetadata.cc
fwdpy11/src/fwdpy11_types/DiploidPopulation.cc
fwdpy11/src/fwdpy11_types/DiploidVector.cc
fwdpy11/src/fwdpy11_types/HaploidGenomeVector.cc
fwdpy11/src/fwdpy11_types/Mutation.cc
fwdpy11/src/fwdpy11_types/MutationVector.cc
fwdpy11/src/fwdpy11_types/PopulationBase.cc
fwdpy11/src/fwdpy11_types/RecordNothing.cc
fwdpy11/src/fwdpy11_types/get_individuals.hpp
fwdpy11/src/fwdpy11_types/init.cc
fwdpy11/src/fwdpy11_types/rng.cc
fwdpy11/src/fwdpy11_types/ts_from_tskit.cc
fwdpy11/src/fwdpy11_types/tsrecorders.cc
fwdpy11/src/genetic_value_noise/GaussianNoise.cc
fwdpy11/src/genetic_value_noise/GeneticValueNoise.cc
fwdpy11/src/genetic_value_noise/NoNoise.cc
fwdpy11/src/genetic_value_noise/init.cc
fwdpy11/src/genetic_value_to_fitness/GSS.cc
fwdpy11/src/genetic_value_to_fitness/GSSmo.cc
fwdpy11/src/genetic_value_to_fitness/GeneticValueIsFitness.cc
fwdpy11/src/genetic_value_to_fitness/GeneticValueIsTrait.cc
fwdpy11/src/genetic_value_to_fitness/GeneticValueToFitnessMap.cc
fwdpy11/src/genetic_value_to_fitness/MultivariateGSS.cc
fwdpy11/src/genetic_value_to_fitness/MultivariateGSSmo.cc
fwdpy11/src/genetic_value_to_fitness/MultivariateGeneticValueToFitnessMap.cc
fwdpy11/src/genetic_value_to_fitness/init.cc
fwdpy11/src/genetic_values/Additive.cc
fwdpy11/src/genetic_values/DiploidMultivariateEffectsStrictAdditive.cc
fwdpy11/src/genetic_values/DiploidMultivariateGeneticValueWithMapping.cc
fwdpy11/src/genetic_values/GBR.cc
fwdpy11/src/genetic_values/GeneticValue.cc
fwdpy11/src/genetic_values/GeneticValueWithMapping.cc
fwdpy11/src/genetic_values/Multiplicative.cc
fwdpy11/src/genetic_values/dgvalue_pointer_vector.cc
fwdpy11/src/genetic_values/init.cc
fwdpy11/src/gsl/gsl_random.cc
fwdpy11/src/gsl/init.cc
fwdpy11/src/regions/ConstantS.cc
fwdpy11/src/regions/ExpS.cc
fwdpy11/src/regions/GammaS.cc
fwdpy11/src/regions/GaussianS.cc
fwdpy11/src/regions/MultivariateGaussianEffects.cc
fwdpy11/src/regions/MutationRegions.cc
fwdpy11/src/regions/RecombinationRegions.cc
fwdpy11/src/regions/Region.cc
fwdpy11/src/regions/Sregion.cc
fwdpy11/src/regions/UniformS.cc
fwdpy11/src/regions/init.cc
fwdpy11/src/ts/DataMatrixIterator.cc
fwdpy11/src/ts/TreeIterator.cc
fwdpy11/src/ts/VariantIterator.cc
fwdpy11/src/ts/count_mutations.cc
fwdpy11/src/ts/data_matrix_from_tables.cc
fwdpy11/src/ts/infinite_sites.cc
fwdpy11/src/ts/init.cc
fwdpy11/src/ts/node_traversal.cc
fwdpy11/src/ts/node_traversal.hpp
fwdpy11/src/ts/simplify.cc
m4/ax_cxx_compile_stdxx_11.m4
m4/python.m4
tests/CMakeLists.txt
tests/EsizeZero.cpp
tests/common_mako.py
tests/custom_additive.cpp
tests/custom_stateless_genotype.cpp
tests/discrete_demography_roundtrips.cpp
tests/fixation_properties.cpp
tests/gsl_error.cpp
tests/inherit_noise.cpp
tests/mvDES_lowlevel.cpp
tests/numpy_array_interface.cpp
tests/pickling_composed_classes.cpp
tests/pickling_cpp.cpp
tests/poptools.cpp
tests/quick_pops.py
tests/snowdrift.cpp
tests/testMultivariateGSSmo.cpp
tests/test_DataMatrix.py
tests/test_DemographyDebugger.py
tests/test_DiploidPopulation.py
tests/test_GSLerror.py
tests/test_ModelParams.py
tests/test_Mutation.py
tests/test_SampleRecorder.py
tests/test_TableCollection_fs.py
tests/test_add_mutation.py
tests/test_binary_format_compatibility.py
tests/test_custom_stateless_fitness.py
tests/test_demographic_models.py
tests/test_dgvalue_pointer_vector.py
tests/test_discrete_demography.py
tests/test_discrete_demography_with_tree_sequences.py
tests/test_fixation_properties.py
tests/test_fwdpp_types.py
tests/test_genetic_value_noise.py
tests/test_genetic_value_to_fitness.py
tests/test_genetic_values.py
tests/test_inherited_noise.py
tests/test_multivariate_effects.py
tests/test_mutation_labels.py
tests/test_numpy.py
tests/test_numpy_array_interface.py
tests/test_opaque.py
tests/test_pickling.py
tests/test_pickling_composed_classes.py
tests/test_popobject_create.py
tests/test_record_genetic_value_matrix.py
tests/test_regions.py
tests/test_simple_parallel.py
tests/test_stateful_fitness.py
tests/test_stopping_criterion.py
tests/test_tree_sequences.py
tests/test_tree_sequences_esize_zero_selected_variants.py
tests/test_tree_sequences_with_neutral_mutations.py
tests/test_ts_from_msprime.py
tests/test_util.py
tests/test_wright_fisher.py
tests/v045.bin
tests/v045.lzma