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CMakeLists.txt
COPYING
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cpp/CMakeLists.txt
cpp/_fwdpy11.cc
cpp/array_proxies/init.cc
cpp/demes/forward_graph.cc
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cpp/discrete_demography/exceptions.cc
cpp/discrete_demography/init.cc
cpp/evolve_population/_evolvets.cc
cpp/evolve_population/init.cc
cpp/evolve_population/no_stopping.cc
cpp/functions/_add_mutation.cc
cpp/functions/add_mutation.cc
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cpp/functions/init.cc
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cpp/fwdpp_types/Edge.cc
cpp/fwdpp_types/EdgeTable.cc
cpp/fwdpp_types/HaploidGenome.cc
cpp/fwdpp_types/MutationBase.cc
cpp/fwdpp_types/MutationRecord.cc
cpp/fwdpp_types/MutationTable.cc
cpp/fwdpp_types/NULL_NODE.cc
cpp/fwdpp_types/Node.cc
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cpp/fwdpp_types/Site.cc
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cpp/fwdpy11_types/DiploidGenotype.cc
cpp/fwdpy11_types/DiploidMetadata.cc
cpp/fwdpy11_types/DiploidPopulation.cc
cpp/fwdpy11_types/DiploidVector.cc
cpp/fwdpy11_types/GeneticMapUnit.cc
cpp/fwdpy11_types/HaploidGenomeVector.cc
cpp/fwdpy11_types/Mutation.cc
cpp/fwdpy11_types/MutationVector.cc
cpp/fwdpy11_types/PopulationBase.cc
cpp/fwdpy11_types/RecordNothing.cc
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cpp/fwdpy11_types/rng.cc
cpp/fwdpy11_types/ts_from_tskit.cc
cpp/fwdpy11_types/tsrecorders.cc
cpp/genetic_value_noise/GaussianNoise.cc
cpp/genetic_value_noise/GeneticValueNoise.cc
cpp/genetic_value_noise/NoNoise.cc
cpp/genetic_value_noise/init.cc
cpp/genetic_value_to_fitness/GSSmo.cc
cpp/genetic_value_to_fitness/GaussianStabilizingSelection.cc
cpp/genetic_value_to_fitness/GeneticValueIsFitness.cc
cpp/genetic_value_to_fitness/GeneticValueIsTrait.cc
cpp/genetic_value_to_fitness/GeneticValueToFitnessMap.cc
cpp/genetic_value_to_fitness/MultivariateGSSmo.cc
cpp/genetic_value_to_fitness/Optimum.cc
cpp/genetic_value_to_fitness/PleiotropicOptima.cc
cpp/genetic_value_to_fitness/init.cc
cpp/genetic_values/Additive.cc
cpp/genetic_values/DiploidGeneticValue.cc
cpp/genetic_values/DiploidMultivariateEffectsStrictAdditive.cc
cpp/genetic_values/GBR.cc
cpp/genetic_values/Multiplicative.cc
cpp/genetic_values/PyDiploidGeneticValue.cc
cpp/genetic_values/dgvalue_pointer_vector.cc
cpp/genetic_values/init.cc
cpp/gsl/gsl_random.cc
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cpp/mutation_dominance/MutationDominance.cc
cpp/mutation_dominance/init.cc
cpp/regions/ConstantS.cc
cpp/regions/DiscreteDESD.cc
cpp/regions/ExpS.cc
cpp/regions/GammaS.cc
cpp/regions/GaussianS.cc
cpp/regions/LogNormalS.cc
cpp/regions/MultivariateGaussianEffects.cc
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cpp/regions/mvDES.cc
cpp/ts/DataMatrixIterator.cc
cpp/ts/TreeIterator.cc
cpp/ts/VariantIterator.cc
cpp/ts/count_mutations.cc
cpp/ts/data_matrix_from_tables.cc
cpp/ts/infinite_sites.cc
cpp/ts/init.cc
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cpptests/test_MutationDominance.cc
cpptests/test_Sregion_from_mvnorm.cc
cpptests/test_core_genetic_map_regions.cc
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cpptests/test_gss_classes.cc
deployment/docker/Dockerfile
deployment/linux_wheels/run_wheel_workflow.sh
deployment/linux_wheels/wheel_workflow.sh
doc/Makefile
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doc/references.bib
doc/examples/bgs.md
doc/examples/gss_divergent_optima.md
doc/examples/pysnowdrift.md
doc/examples/pysnowdrift.png
doc/examples/recapitation.md
doc/examples/recorder.md
doc/images/Makefile
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doc/images/migtest.png
doc/images/moments_IM_gamma_minus_5.png
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doc/long_vignettes/gss_vignette.md
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doc/long_vignettes/pyfreqtracker_sqlite.md
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doc/pages/userenv.md
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doc/short_vignettes/des_vignette.md
doc/short_vignettes/evolvets_vignette.md
doc/short_vignettes/genetic_values_multi_deme_models.md
doc/short_vignettes/genetic_values_multi_deme_models_advanced.md
doc/short_vignettes/geneticmaps_vignette.md
doc/short_vignettes/genetics_vignettes_intro.md
doc/short_vignettes/gutenkunst_ooa.yml
doc/short_vignettes/gvalues_fitness.md
doc/short_vignettes/gvalues_traits.md
doc/short_vignettes/import_mutations_from_tskit.md
doc/short_vignettes/incomplete_sweep.md
doc/short_vignettes/initpops_vignette.md
doc/short_vignettes/multivariate_gaussian_effect_sizes_across_demes.md
doc/short_vignettes/multivariate_lognormal_effect_sizes.md
doc/short_vignettes/mutationdominance_vignette.md
doc/short_vignettes/neutralmuts_vignette.md
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doc/short_vignettes/recorders_vignette.md
doc/short_vignettes/selective_sweep.md
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doc/short_vignettes/trackmutationfates.md
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doc/unused_pages/recombination.rst_old
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examples/COPYING
examples/README.rst
examples/gss_divergent_optima/gss_divergent_optima.py
examples/plugin/CMakeLists.txt
examples/plugin/gvalue_recorder.cc
examples/plugin/test_plugin.py
examples/python_genetic_values/pysnowdrift.py
fwdpy11/__init__.py
fwdpy11/__main__.py
fwdpy11/_dev.py
fwdpy11/_evolvets.py
fwdpy11/_version.py
fwdpy11/class_decorators.py
fwdpy11/custom_genetic_value_decorators.py
fwdpy11/discrete_demography.py
fwdpy11/genetic_map_unit.py
fwdpy11/genetic_values.py
fwdpy11/mutation_dominance.py
fwdpy11/regions.py
fwdpy11.egg-info/PKG-INFO
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fwdpy11.egg-info/dependency_links.txt
fwdpy11.egg-info/entry_points.txt
fwdpy11.egg-info/not-zip-safe
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fwdpy11/_functions/__init__.py
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fwdpy11/_types/demographic_model_citation.py
fwdpy11/_types/demographic_model_details.py
fwdpy11/_types/demography_debugger.py
fwdpy11/_types/diploid_population.py
fwdpy11/_types/forward_demes_graph.py
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fwdpy11/_types/population_mixin.py
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fwdpy11/conditional_models/__init__.py
fwdpy11/conditional_models/_selective_sweep.py
fwdpy11/conditional_models/_track_added_mutation.py
fwdpy11/headers/fwdpp/fwdpp/GSLrng_t.hpp
fwdpy11/headers/fwdpp/fwdpp/data_matrix.hpp
fwdpy11/headers/fwdpp/fwdpp/debug.hpp
fwdpy11/headers/fwdpp/fwdpp/diploid.hh
fwdpy11/headers/fwdpp/fwdpp/diploid_population.hpp
fwdpy11/headers/fwdpp/fwdpp/fitness_models.hpp
fwdpy11/headers/fwdpp/fwdpp/forward_types.hpp
fwdpy11/headers/fwdpp/fwdpp/forward_types_serialization.hpp
fwdpy11/headers/fwdpp/fwdpp/fwd_functional.hpp
fwdpy11/headers/fwdpp/fwdpp/gsl_discrete.hpp
fwdpy11/headers/fwdpp/fwdpp/insertion_policies.hpp
fwdpy11/headers/fwdpp/fwdpp/mutate_recombine.hpp
fwdpy11/headers/fwdpp/fwdpp/popgenmut.hpp
fwdpy11/headers/fwdpp/fwdpp/recbinder.hpp
fwdpy11/headers/fwdpp/fwdpp/sample_diploid.hpp
fwdpy11/headers/fwdpp/fwdpp/sample_diploid.tcc
fwdpy11/headers/fwdpp/fwdpp/sampling_functions.hpp
fwdpy11/headers/fwdpp/fwdpp/simparams.hpp
fwdpy11/headers/fwdpp/fwdpp/type_traits.hpp
fwdpy11/headers/fwdpp/fwdpp/util.hpp
fwdpy11/headers/fwdpp/fwdpp/version.hpp
fwdpy11/headers/fwdpp/fwdpp/algorithm/compact_mutations.hpp
fwdpy11/headers/fwdpp/fwdpp/extensions/callbacks.hpp
fwdpy11/headers/fwdpp/fwdpp/extensions/regions.hpp
fwdpy11/headers/fwdpp/fwdpp/fundamental_types/haploid_genome.hpp
fwdpy11/headers/fwdpp/fwdpp/fundamental_types/mutation_base.hpp
fwdpy11/headers/fwdpp/fwdpp/fundamental_types/typedefs.hpp
fwdpy11/headers/fwdpp/fwdpp/genetic_map/binomial_interval.hpp
fwdpy11/headers/fwdpp/fwdpp/genetic_map/binomial_point.hpp
fwdpy11/headers/fwdpp/fwdpp/genetic_map/fixed_number_crossovers.hpp
fwdpy11/headers/fwdpp/fwdpp/genetic_map/genetic_map.hpp
fwdpy11/headers/fwdpp/fwdpp/genetic_map/genetic_map_unit.hpp
fwdpy11/headers/fwdpp/fwdpp/genetic_map/poisson_interval.hpp
fwdpy11/headers/fwdpp/fwdpp/genetic_map/poisson_point.hpp
fwdpy11/headers/fwdpp/fwdpp/gsl/deleter.hpp
fwdpy11/headers/fwdpp/fwdpp/gsl/tags.hpp
fwdpy11/headers/fwdpp/fwdpp/internal/data_matrix_details.hpp
fwdpy11/headers/fwdpp/fwdpp/internal/debug_details.hpp
fwdpy11/headers/fwdpp/fwdpp/internal/haploid_genome_cleaner.hpp
fwdpy11/headers/fwdpp/fwdpp/internal/mutation_internal.hpp
fwdpy11/headers/fwdpp/fwdpp/internal/rec_gamete_updater.hpp
fwdpy11/headers/fwdpp/fwdpp/internal/recombination_common.hpp
fwdpy11/headers/fwdpp/fwdpp/internal/sample_diploid_helpers.hpp
fwdpy11/headers/fwdpp/fwdpp/internal/sampling_functions_details.hpp
fwdpy11/headers/fwdpp/fwdpp/internal/type_traits.hpp
fwdpy11/headers/fwdpp/fwdpp/internal/util.hpp
fwdpy11/headers/fwdpp/fwdpp/internal/void_t.hpp
fwdpy11/headers/fwdpp/fwdpp/io/diploid.hpp
fwdpy11/headers/fwdpp/fwdpp/io/haploid_genome.hpp
fwdpy11/headers/fwdpp/fwdpp/io/mutation.hpp
fwdpy11/headers/fwdpp/fwdpp/io/scalar_serialization.hpp
fwdpy11/headers/fwdpp/fwdpp/io/serialize_population.hpp
fwdpy11/headers/fwdpp/fwdpp/io/detail/serialize_population.hpp
fwdpy11/headers/fwdpp/fwdpp/meta/always_false.hpp
fwdpy11/headers/fwdpp/fwdpp/poptypes/diploid_population.hpp
fwdpy11/headers/fwdpp/fwdpp/poptypes/popbase.hpp
fwdpy11/headers/fwdpp/fwdpp/poptypes/tags.hpp
fwdpy11/headers/fwdpp/fwdpp/simfunctions/recycling.hpp
fwdpy11/headers/fwdpp/fwdpp/sugar/add_mutation.hpp
fwdpy11/headers/fwdpp/fwdpp/sugar/change_neutral.hpp
fwdpy11/headers/fwdpp/fwdpp/tags/tags.hpp
fwdpy11/headers/fwdpp/fwdpp/ts/count_mutations.hpp
fwdpy11/headers/fwdpp/fwdpp/ts/decapitate.hpp
fwdpy11/headers/fwdpp/fwdpp/ts/definitions.hpp
fwdpy11/headers/fwdpp/fwdpp/ts/edge.hpp
fwdpy11/headers/fwdpp/fwdpp/ts/exceptions.hpp
fwdpy11/headers/fwdpp/fwdpp/ts/generate_data_matrix.hpp
fwdpy11/headers/fwdpp/fwdpp/ts/generate_offspring.hpp
fwdpy11/headers/fwdpp/fwdpp/ts/get_parent_ids.hpp
fwdpy11/headers/fwdpp/fwdpp/ts/make_simplifier_state.hpp
fwdpy11/headers/fwdpp/fwdpp/ts/marginal_tree.hpp
fwdpy11/headers/fwdpp/fwdpp/ts/marginal_tree_functions.hpp
fwdpy11/headers/fwdpp/fwdpp/ts/mark_multiple_roots.hpp
fwdpy11/headers/fwdpp/fwdpp/ts/mutate_tables.hpp
fwdpy11/headers/fwdpp/fwdpp/ts/mutation_record.hpp
fwdpy11/headers/fwdpp/fwdpp/ts/mutation_tools.hpp
fwdpy11/headers/fwdpp/fwdpp/ts/node.hpp
fwdpy11/headers/fwdpp/fwdpp/ts/recording.hpp
fwdpy11/headers/fwdpp/fwdpp/ts/recycling.hpp
fwdpy11/headers/fwdpp/fwdpp/ts/remove_fixations_from_gametes.hpp
fwdpy11/headers/fwdpp/fwdpp/ts/serialization.hpp
fwdpy11/headers/fwdpp/fwdpp/ts/serialization_version.hpp
fwdpy11/headers/fwdpp/fwdpp/ts/simplification_flags.hpp
fwdpy11/headers/fwdpp/fwdpp/ts/simplify_tables.hpp
fwdpy11/headers/fwdpp/fwdpp/ts/simplify_tables_output.hpp
fwdpy11/headers/fwdpp/fwdpp/ts/site.hpp
fwdpy11/headers/fwdpp/fwdpp/ts/site_visitor.hpp
fwdpy11/headers/fwdpp/fwdpp/ts/std_table_collection.hpp
fwdpy11/headers/fwdpp/fwdpp/ts/table_collection.hpp
fwdpy11/headers/fwdpp/fwdpp/ts/table_collection_functions.hpp
fwdpy11/headers/fwdpp/fwdpp/ts/table_simplifier.hpp
fwdpy11/headers/fwdpp/fwdpp/ts/tree_visitor.hpp
fwdpy11/headers/fwdpp/fwdpp/ts/visit_sites.hpp
fwdpy11/headers/fwdpp/fwdpp/ts/detail/advance_marginal_tree_policies.hpp
fwdpy11/headers/fwdpp/fwdpp/ts/detail/generate_data_matrix_details.hpp
fwdpy11/headers/fwdpp/fwdpp/ts/marginal_tree_functions/children.hpp
fwdpy11/headers/fwdpp/fwdpp/ts/marginal_tree_functions/node_traversal_order.hpp
fwdpy11/headers/fwdpp/fwdpp/ts/marginal_tree_functions/node_traversal_preorder.hpp
fwdpy11/headers/fwdpp/fwdpp/ts/marginal_tree_functions/nodes.hpp
fwdpy11/headers/fwdpp/fwdpp/ts/marginal_tree_functions/roots.hpp
fwdpy11/headers/fwdpp/fwdpp/ts/marginal_tree_functions/samples.hpp
fwdpy11/headers/fwdpp/fwdpp/ts/marginal_tree_functions/statistics.hpp
fwdpy11/headers/fwdpp/fwdpp/ts/recording/diploid_offspring.hpp
fwdpy11/headers/fwdpp/fwdpp/ts/recording/edge_buffer.hpp
fwdpy11/headers/fwdpp/fwdpp/ts/recording/mutations.hpp
fwdpy11/headers/fwdpp/fwdpp/ts/simplification/simplification.hpp
fwdpy11/headers/fwdpp/fwdpp/types/mutation.hpp
fwdpy11/headers/fwdpp/fwdpp/types/nested_forward_lists.hpp
fwdpy11/headers/fwdpp/fwdpp/util/abstract_cloneable.hpp
fwdpy11/headers/fwdpp/fwdpp/util/enum_bitflags.hpp
fwdpy11/headers/fwdpp/fwdpp/util/named_type.hpp
fwdpy11/headers/fwdpp/fwdpp/util/nested_forward_lists.hpp
fwdpy11/headers/fwdpp/fwdpp/util/validators.hpp
fwdpy11/headers/fwdpp/fwdpp/util/wrapped_range.hpp
fwdpy11/headers/fwdpy11/rng.hpp
fwdpy11/headers/fwdpy11/samplers.hpp
fwdpy11/headers/fwdpy11/serialization.hpp
fwdpy11/headers/fwdpy11/discrete_demography/exceptions.hpp
fwdpy11/headers/fwdpy11/evolvets/SampleRecorder.hpp
fwdpy11/headers/fwdpy11/evolvets/recorders.hpp
fwdpy11/headers/fwdpy11/evolvets/sample_recorder_types.hpp
fwdpy11/headers/fwdpy11/genetic_value_data/genetic_value_data.hpp
fwdpy11/headers/fwdpy11/genetic_value_noise/GeneticValueNoise.hpp
fwdpy11/headers/fwdpy11/genetic_value_noise/NoNoise.hpp
fwdpy11/headers/fwdpy11/genetic_value_to_fitness/GSSmo.hpp
fwdpy11/headers/fwdpy11/genetic_value_to_fitness/GaussianStabilizingSelection.hpp
fwdpy11/headers/fwdpy11/genetic_value_to_fitness/GeneticValueIsFitness.hpp
fwdpy11/headers/fwdpy11/genetic_value_to_fitness/GeneticValueIsTrait.hpp
fwdpy11/headers/fwdpy11/genetic_value_to_fitness/GeneticValueToFitnessMap.hpp
fwdpy11/headers/fwdpy11/genetic_value_to_fitness/MultivariateGSSmo.hpp
fwdpy11/headers/fwdpy11/genetic_value_to_fitness/Optimum.hpp
fwdpy11/headers/fwdpy11/genetic_value_to_fitness/PleiotropicOptima.hpp
fwdpy11/headers/fwdpy11/genetic_values/DiploidGeneticValue.hpp
fwdpy11/headers/fwdpy11/genetic_values/DiploidMultivariateEffectsStrictAdditive.hpp
fwdpy11/headers/fwdpy11/genetic_values/default_update.hpp
fwdpy11/headers/fwdpy11/genetic_values/dgvalue_pointer_vector.hpp
fwdpy11/headers/fwdpy11/genetic_values/fwdpp_wrappers/fwdpp_genetic_value.hpp
fwdpy11/headers/fwdpy11/gsl/gsl_error_handler_wrapper.hpp
fwdpy11/headers/fwdpy11/mutation_dominance/MutationDominance.hpp
fwdpy11/headers/fwdpy11/numpy/array.hpp
fwdpy11/headers/fwdpy11/policies/mutation.hpp
fwdpy11/headers/fwdpy11/regions/ConstantS.hpp
fwdpy11/headers/fwdpy11/regions/ExpS.hpp
fwdpy11/headers/fwdpy11/regions/GammaS.hpp
fwdpy11/headers/fwdpy11/regions/GaussianS.hpp
fwdpy11/headers/fwdpy11/regions/LogNormalS.hpp
fwdpy11/headers/fwdpy11/regions/MultivariateGaussianEffects.hpp
fwdpy11/headers/fwdpy11/regions/MutationRegions.hpp
fwdpy11/headers/fwdpy11/regions/RecombinationRegions.hpp
fwdpy11/headers/fwdpy11/regions/Region.hpp
fwdpy11/headers/fwdpy11/regions/Sregion.hpp
fwdpy11/headers/fwdpy11/regions/UniformS.hpp
fwdpy11/headers/fwdpy11/regions/mvDES.hpp
fwdpy11/headers/fwdpy11/serialization/Diploid.hpp
fwdpy11/headers/fwdpy11/serialization/Mutation.hpp
fwdpy11/headers/fwdpy11/serialization/backwards_compat.hpp
fwdpy11/headers/fwdpy11/serialization/diploid_metadata.hpp
fwdpy11/headers/fwdpy11/types/Diploid.hpp
fwdpy11/headers/fwdpy11/types/DiploidPopulation.hpp
fwdpy11/headers/fwdpy11/types/Mutation.hpp
fwdpy11/headers/fwdpy11/types/Population.hpp
fwdpy11/headers/fwdpy11/util/array_proxy.hpp
fwdpy11/headers/fwdpy11/util/clone_cloneable.hpp
fwdpy11/headers/fwdpy11/util/convert_lists.hpp
fwdpy11/tskit_tools/__init__.py
fwdpy11/tskit_tools/_dump_tables_to_tskit.py
fwdpy11/tskit_tools/_flags.py
fwdpy11/tskit_tools/metadata.py
fwdpy11/tskit_tools/metadata_schema.py
lib/CMakeLists.txt
lib/core/fp11rust.h
lib/core/demes/forward_graph.hpp
lib/core/diploid_population/set_mutations.hpp
lib/core/evolve_discrete_demes/evolvets.hpp
lib/core/genetic_maps/regions.hpp
lib/core/internal/gsl_ran_flat.hpp
lib/demes/forward_graph.cc
lib/diploid_population/set_mutations.cc
lib/evolve_discrete_demes/cleanup_metadata.cc
lib/evolve_discrete_demes/cleanup_metadata.hpp
lib/evolve_discrete_demes/diploid_pop_fitness.cc
lib/evolve_discrete_demes/diploid_pop_fitness.hpp
lib/evolve_discrete_demes/evolve_generation_ts.hpp
lib/evolve_discrete_demes/evolvets.cc
lib/evolve_discrete_demes/index_and_count_mutations.cc
lib/evolve_discrete_demes/index_and_count_mutations.hpp
lib/evolve_discrete_demes/remove_extinct_genomes.cc
lib/evolve_discrete_demes/remove_extinct_genomes.hpp
lib/evolve_discrete_demes/remove_extinct_mutations.cc
lib/evolve_discrete_demes/remove_extinct_mutations.hpp
lib/evolve_discrete_demes/runtime_checks.cc
lib/evolve_discrete_demes/runtime_checks.hpp
lib/evolve_discrete_demes/simplify_tables.hpp
lib/evolve_discrete_demes/track_ancestral_counts.cc
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lib/evolve_discrete_demes/track_mutation_counts.cc
lib/evolve_discrete_demes/track_mutation_counts.hpp
lib/evolve_discrete_demes/util.cc
lib/evolve_discrete_demes/util.hpp
lib/evolve_discrete_demes/discrete_demography/discrete_demography.hpp
lib/evolve_discrete_demes/discrete_demography/simulation/functions.hpp
lib/evolve_discrete_demes/discrete_demography/simulation/mating_event_type.hpp
lib/evolve_discrete_demes/discrete_demography/simulation/multideme_fitness_bookmark.hpp
lib/evolve_discrete_demes/discrete_demography/simulation/multideme_fitness_lookups.hpp
lib/evolve_discrete_demes/discrete_demography/simulation/pick_parents.cc
lib/evolve_discrete_demes/discrete_demography/simulation/pick_parents.hpp
lib/evolve_discrete_demes/discrete_demography/simulation/validate_parental_state.cc
lib/genetic_maps/regions.cc
lib/mutation_dominance/dependency_injection.cc
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tests/test_Mutation.py
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tests/test_TableCollection_fs.py
tests/test_add_mutation.py
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tests/test_genetic_value_to_fitness.py
tests/test_genetic_values.py
tests/test_import_tskit_mutations.py
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tests/test_metadata_encoding_with_tskit.py
tests/test_metadata_roundtrips_via_simulation.py
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tests/demes-spec/test-cases/invalid/bad_epochs_15.yaml
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tests/demes-spec/test-cases/invalid/bad_generation_time_01.yaml
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tests/demes-spec/test-cases/invalid/bad_migration_demes_01.yaml
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tests/demes-spec/test-cases/invalid/bad_migration_rate_01.yaml
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tests/demes-spec/test-cases/invalid/bad_migration_source_dest_01.yaml
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tests/demes-spec/test-cases/invalid/bad_migration_start_end_times_15.yaml
tests/demes-spec/test-cases/invalid/bad_migration_time_01.yaml
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tests/demes-spec/test-cases/invalid/bad_pulse_proportion_01.yaml
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tests/demes-spec/test-cases/invalid/bad_time_units_01.yaml
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tests/demes-spec/test-cases/invalid/bad_toplevel_01.yaml
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tests/demes-spec/test-cases/invalid/deme_end_time_02.yaml
tests/demes-spec/test-cases/invalid/duplicate_ancestors_01.yaml
tests/demes-spec/test-cases/invalid/duplicate_deme_01.yaml
tests/demes-spec/test-cases/invalid/empty_file.yaml
tests/demes-spec/test-cases/invalid/incompatible_selfing_cloning_rates_02.yaml
tests/demes-spec/test-cases/invalid/incompatible_selfing_cloning_rates_03.yaml
tests/demes-spec/test-cases/invalid/invalid_fields_01.yaml
tests/demes-spec/test-cases/invalid/invalid_fields_02.yaml
tests/demes-spec/test-cases/invalid/invalid_fields_03.yaml
tests/demes-spec/test-cases/invalid/invalid_fields_04.yaml
tests/demes-spec/test-cases/invalid/invalid_fields_05.yaml
tests/demes-spec/test-cases/invalid/invalid_fields_06.yaml
tests/demes-spec/test-cases/invalid/invalid_fields_07.yaml
tests/demes-spec/test-cases/invalid/invalid_fields_08.yaml
tests/demes-spec/test-cases/invalid/invalid_fields_09.yaml
tests/demes-spec/test-cases/invalid/invalid_fields_10.yaml
tests/demes-spec/test-cases/invalid/invalid_fields_11.yaml
tests/demes-spec/test-cases/invalid/invalid_fields_12.yaml
tests/demes-spec/test-cases/invalid/invalid_yaml_01.yaml
tests/demes-spec/test-cases/invalid/invalid_yaml_02.yaml
tests/demes-spec/test-cases/invalid/missing_demes_01.yaml
tests/demes-spec/test-cases/invalid/missing_demes_02.yaml
tests/demes-spec/test-cases/invalid/missing_generation_time_01.yaml
tests/demes-spec/test-cases/invalid/missing_time_units_01.yaml
tests/demes-spec/test-cases/invalid/overlapping_migrations_01.yaml
tests/demes-spec/test-cases/invalid/overlapping_migrations_02.yaml
tests/demes-spec/test-cases/invalid/overlapping_migrations_03.yaml
tests/demes-spec/test-cases/invalid/overlapping_migrations_04.yaml
tests/demes-spec/test-cases/invalid/overlapping_migrations_05.yaml
tests/demes-spec/test-cases/invalid/pulse_proportions_sum_02.yaml
tests/demes-spec/test-cases/invalid/unsupported_null_migration_01.yaml
tests/demes-spec/test-cases/invalid/unsupported_null_migration_02.yaml
tests/demes-spec/test-cases/invalid/unsupported_null_migration_03.yaml
tests/demes-spec/test-cases/valid/admixture_01.yaml
tests/demes-spec/test-cases/valid/admixture_02.yaml
tests/demes-spec/test-cases/valid/admixture_03.yaml
tests/demes-spec/test-cases/valid/admixture_04.yaml
tests/demes-spec/test-cases/valid/admixture_05.yaml
tests/demes-spec/test-cases/valid/admixture_06.yaml
tests/demes-spec/test-cases/valid/admixture_07.yaml
tests/demes-spec/test-cases/valid/admixture_08.yaml
tests/demes-spec/test-cases/valid/admixture_09.yaml
tests/demes-spec/test-cases/valid/admixture_10.yaml
tests/demes-spec/test-cases/valid/admixture_11.yaml
tests/demes-spec/test-cases/valid/admixture_12.yaml
tests/demes-spec/test-cases/valid/admixture_13.yaml
tests/demes-spec/test-cases/valid/admixture_14.yaml
tests/demes-spec/test-cases/valid/admixture_15.yaml
tests/demes-spec/test-cases/valid/admixture_16.yaml
tests/demes-spec/test-cases/valid/admixture_17.yaml
tests/demes-spec/test-cases/valid/admixture_18.yaml
tests/demes-spec/test-cases/valid/admixture_19.yaml
tests/demes-spec/test-cases/valid/admixture_20.yaml
tests/demes-spec/test-cases/valid/admixture_21.yaml
tests/demes-spec/test-cases/valid/admixture_22.yaml
tests/demes-spec/test-cases/valid/admixture_23.yaml
tests/demes-spec/test-cases/valid/admixture_24.yaml
tests/demes-spec/test-cases/valid/admixture_25.yaml
tests/demes-spec/test-cases/valid/admixture_26.yaml
tests/demes-spec/test-cases/valid/admixture_27.yaml
tests/demes-spec/test-cases/valid/admixture_and_split_01.yaml
tests/demes-spec/test-cases/valid/args_from_file_01.yaml
tests/demes-spec/test-cases/valid/asymmetric_migration_01.yaml
tests/demes-spec/test-cases/valid/basic_resolution_01.yaml
tests/demes-spec/test-cases/valid/basic_resolution_02.yaml
tests/demes-spec/test-cases/valid/basic_resolution_03.yaml
tests/demes-spec/test-cases/valid/basic_resolution_04.yaml
tests/demes-spec/test-cases/valid/basic_resolution_05.yaml
tests/demes-spec/test-cases/valid/basic_resolution_06.yaml
tests/demes-spec/test-cases/valid/bottleneck.yaml
tests/demes-spec/test-cases/valid/browning_america.yaml
tests/demes-spec/test-cases/valid/cloning_example.yaml
tests/demes-spec/test-cases/valid/defaults_asymmetric_migration_changing_rate.yaml
tests/demes-spec/test-cases/valid/defaults_deme_ancestors.yaml
tests/demes-spec/test-cases/valid/defaults_deme_many_epochs_global.yaml
tests/demes-spec/test-cases/valid/defaults_deme_many_epochs_local.yaml
tests/demes-spec/test-cases/valid/defaults_deme_many_epochs_overrides.yaml
tests/demes-spec/test-cases/valid/defaults_migration_properties.yaml
tests/demes-spec/test-cases/valid/defaults_pulse_properties.yaml
tests/demes-spec/test-cases/valid/defaults_size_function_01.yaml
tests/demes-spec/test-cases/valid/defaults_size_function_02.yaml
tests/demes-spec/test-cases/valid/defaults_size_function_03.yaml
tests/demes-spec/test-cases/valid/defaults_size_function_04.yaml
tests/demes-spec/test-cases/valid/defaults_symmetric_migration_changing_rate.yaml
tests/demes-spec/test-cases/valid/deme_cloning_rate_01.yaml
tests/demes-spec/test-cases/valid/deme_cloning_rate_02.yaml
tests/demes-spec/test-cases/valid/deme_cloning_rate_03.yaml
tests/demes-spec/test-cases/valid/deme_end_time_01.yaml
tests/demes-spec/test-cases/valid/deme_names_01.yaml
tests/demes-spec/test-cases/valid/deme_names_02.yaml
tests/demes-spec/test-cases/valid/deme_names_03.yaml
tests/demes-spec/test-cases/valid/deme_selfing_rate_01.yaml
tests/demes-spec/test-cases/valid/demelevel_defaults_epoch_01.yaml
tests/demes-spec/test-cases/valid/demelevel_defaults_epoch_02.yaml
tests/demes-spec/test-cases/valid/demelevel_defaults_epoch_03.yaml
tests/demes-spec/test-cases/valid/demelevel_defaults_epoch_04.yaml
tests/demes-spec/test-cases/valid/demelevel_defaults_epoch_05.yaml
tests/demes-spec/test-cases/valid/demelevel_defaults_epoch_06.yaml
tests/demes-spec/test-cases/valid/discrete_demographic_events_01.yaml
tests/demes-spec/test-cases/valid/discrete_demographic_events_02.yaml
tests/demes-spec/test-cases/valid/discrete_demographic_events_03.yaml
tests/demes-spec/test-cases/valid/discrete_demographic_events_04.yaml
tests/demes-spec/test-cases/valid/discrete_demographic_events_05.yaml
tests/demes-spec/test-cases/valid/discrete_demographic_events_06.yaml
tests/demes-spec/test-cases/valid/discrete_demographic_events_07.yaml
tests/demes-spec/test-cases/valid/fill_description_01.yaml
tests/demes-spec/test-cases/valid/fill_epoch_cloning_rates_01.yaml
tests/demes-spec/test-cases/valid/fill_epoch_cloning_rates_02.yaml
tests/demes-spec/test-cases/valid/fill_epoch_selfing_rates_01.yaml
tests/demes-spec/test-cases/valid/fill_epoch_selfing_rates_02.yaml
tests/demes-spec/test-cases/valid/fill_migration_bounds_01.yaml
tests/demes-spec/test-cases/valid/finite_start_time_01.yaml
tests/demes-spec/test-cases/valid/growth_rates_01.yaml
tests/demes-spec/test-cases/valid/growth_rates_02.yaml
tests/demes-spec/test-cases/valid/growth_rates_03.yaml
tests/demes-spec/test-cases/valid/growth_rates_04.yaml
tests/demes-spec/test-cases/valid/growth_rates_05.yaml
tests/demes-spec/test-cases/valid/growth_rates_06.yaml
tests/demes-spec/test-cases/valid/growth_rates_07.yaml
tests/demes-spec/test-cases/valid/growth_rates_08.yaml
tests/demes-spec/test-cases/valid/growth_rates_09.yaml
tests/demes-spec/test-cases/valid/growth_rates_10.yaml
tests/demes-spec/test-cases/valid/growth_rates_11.yaml
tests/demes-spec/test-cases/valid/growth_rates_12.yaml
tests/demes-spec/test-cases/valid/growth_rates_13.yaml
tests/demes-spec/test-cases/valid/growth_rates_14.yaml
tests/demes-spec/test-cases/valid/growth_rates_15.yaml
tests/demes-spec/test-cases/valid/growth_rates_16.yaml
tests/demes-spec/test-cases/valid/gutenkunst_ooa_01.yaml
tests/demes-spec/test-cases/valid/ignored_options_have_no_effect_01.yaml
tests/demes-spec/test-cases/valid/infinity_01.yaml
tests/demes-spec/test-cases/valid/infinity_02.yaml
tests/demes-spec/test-cases/valid/infinity_03.yaml
tests/demes-spec/test-cases/valid/infinity_04.yaml
tests/demes-spec/test-cases/valid/infinity_05.yaml
tests/demes-spec/test-cases/valid/infinity_06.yaml
tests/demes-spec/test-cases/valid/infinity_07.yaml
tests/demes-spec/test-cases/valid/infinity_08.yaml
tests/demes-spec/test-cases/valid/isclose_01.yaml
tests/demes-spec/test-cases/valid/isclose_02.yaml
tests/demes-spec/test-cases/valid/isclose_03.yaml
tests/demes-spec/test-cases/valid/isclose_04.yaml
tests/demes-spec/test-cases/valid/isclose_05.yaml
tests/demes-spec/test-cases/valid/isclose_06.yaml
tests/demes-spec/test-cases/valid/isclose_07.yaml
tests/demes-spec/test-cases/valid/isclose_08.yaml
tests/demes-spec/test-cases/valid/isclose_09.yaml
tests/demes-spec/test-cases/valid/isclose_10.yaml
tests/demes-spec/test-cases/valid/isclose_11.yaml
tests/demes-spec/test-cases/valid/isclose_12.yaml
tests/demes-spec/test-cases/valid/isclose_13.yaml
tests/demes-spec/test-cases/valid/isclose_14.yaml
tests/demes-spec/test-cases/valid/isclose_15.yaml
tests/demes-spec/test-cases/valid/isclose_16.yaml
tests/demes-spec/test-cases/valid/isclose_17.yaml
tests/demes-spec/test-cases/valid/isclose_18.yaml
tests/demes-spec/test-cases/valid/isclose_19.yaml
tests/demes-spec/test-cases/valid/isclose_20.yaml
tests/demes-spec/test-cases/valid/isclose_21.yaml
tests/demes-spec/test-cases/valid/isclose_22.yaml
tests/demes-spec/test-cases/valid/jacobs_papuans.yaml
tests/demes-spec/test-cases/valid/line_topology.yaml
tests/demes-spec/test-cases/valid/migration_01.yaml
tests/demes-spec/test-cases/valid/migration_02.yaml
tests/demes-spec/test-cases/valid/migration_03.yaml
tests/demes-spec/test-cases/valid/migration_04.yaml
tests/demes-spec/test-cases/valid/migration_05.yaml
tests/demes-spec/test-cases/valid/migration_06.yaml
tests/demes-spec/test-cases/valid/migration_07.yaml
tests/demes-spec/test-cases/valid/migration_08.yaml
tests/demes-spec/test-cases/valid/migration_09.yaml
tests/demes-spec/test-cases/valid/migration_10.yaml
tests/demes-spec/test-cases/valid/migration_rates_sum_01.yaml
tests/demes-spec/test-cases/valid/migration_rates_sum_02.yaml
tests/demes-spec/test-cases/valid/minimal_01.yaml
tests/demes-spec/test-cases/valid/minimal_02.yaml
tests/demes-spec/test-cases/valid/msdoc_example1_01.yaml
tests/demes-spec/test-cases/valid/msdoc_example2_01.yaml
tests/demes-spec/test-cases/valid/msdoc_example3_01.yaml
tests/demes-spec/test-cases/valid/msdoc_example4_01.yaml
tests/demes-spec/test-cases/valid/msdoc_example5_01.yaml
tests/demes-spec/test-cases/valid/offshoots.yaml
tests/demes-spec/test-cases/valid/overlapping_migrations_01.yaml
tests/demes-spec/test-cases/valid/proportions_01.yaml
tests/demes-spec/test-cases/valid/pulse_edge_case_01.yaml
tests/demes-spec/test-cases/valid/pulse_edge_case_02.yaml
tests/demes-spec/test-cases/valid/pulse_proportions_sum_01.yaml
tests/demes-spec/test-cases/valid/pulse_same_time_01.yaml
tests/demes-spec/test-cases/valid/pulse_same_time_02.yaml
tests/demes-spec/test-cases/valid/pulse_same_time_03.yaml
tests/demes-spec/test-cases/valid/pulse_same_time_04.yaml
tests/demes-spec/test-cases/valid/pulse_same_time_05.yaml
tests/demes-spec/test-cases/valid/pulse_same_time_06.yaml
tests/demes-spec/test-cases/valid/pulse_same_time_07.yaml
tests/demes-spec/test-cases/valid/pulse_same_time_08.yaml
tests/demes-spec/test-cases/valid/selfing_cloning_01.yaml
tests/demes-spec/test-cases/valid/simplify_mix_sym_asym_migrations_01.yaml
tests/demes-spec/test-cases/valid/simplify_mix_sym_asym_migrations_02.yaml
tests/demes-spec/test-cases/valid/simplify_mix_sym_asym_migrations_03.yaml
tests/demes-spec/test-cases/valid/simplify_mix_sym_asym_migrations_04.yaml
tests/demes-spec/test-cases/valid/simplify_mix_sym_asym_migrations_05.yaml
tests/demes-spec/test-cases/valid/simplify_mix_sym_asym_migrations_06.yaml
tests/demes-spec/test-cases/valid/simplify_mix_sym_asym_migrations_07.yaml
tests/demes-spec/test-cases/valid/simplify_mix_sym_asym_migrations_08.yaml
tests/demes-spec/test-cases/valid/simplify_mix_sym_asym_migrations_09.yaml
tests/demes-spec/test-cases/valid/simplify_mix_sym_asym_migrations_10.yaml
tests/demes-spec/test-cases/valid/simplify_mix_sym_asym_migrations_11.yaml
tests/demes-spec/test-cases/valid/simplify_multiple_symmetric_migrations_01.yaml
tests/demes-spec/test-cases/valid/simplify_multiple_symmetric_migrations_02.yaml
tests/demes-spec/test-cases/valid/simplify_symmetric_migrations_branching_demography_01.yaml
tests/demes-spec/test-cases/valid/size_changes_01.yaml
tests/demes-spec/test-cases/valid/size_changes_02.yaml
tests/demes-spec/test-cases/valid/size_changes_03.yaml
tests/demes-spec/test-cases/valid/size_changes_04.yaml
tests/demes-spec/test-cases/valid/size_changes_05.yaml
tests/demes-spec/test-cases/valid/size_changes_06.yaml
tests/demes-spec/test-cases/valid/size_changes_07.yaml
tests/demes-spec/test-cases/valid/size_changes_08.yaml
tests/demes-spec/test-cases/valid/size_changes_09.yaml
tests/demes-spec/test-cases/valid/size_changes_10.yaml
tests/demes-spec/test-cases/valid/size_changes_11.yaml
tests/demes-spec/test-cases/valid/size_changes_12.yaml
tests/demes-spec/test-cases/valid/size_changes_13.yaml
tests/demes-spec/test-cases/valid/size_changes_14.yaml
tests/demes-spec/test-cases/valid/size_changes_15.yaml
tests/demes-spec/test-cases/valid/size_changes_16.yaml
tests/demes-spec/test-cases/valid/size_changes_17.yaml
tests/demes-spec/test-cases/valid/size_changes_18.yaml
tests/demes-spec/test-cases/valid/size_changes_19.yaml
tests/demes-spec/test-cases/valid/size_changes_20.yaml
tests/demes-spec/test-cases/valid/size_changes_21.yaml
tests/demes-spec/test-cases/valid/size_changes_22.yaml
tests/demes-spec/test-cases/valid/size_changes_23.yaml
tests/demes-spec/test-cases/valid/size_changes_24.yaml
tests/demes-spec/test-cases/valid/size_changes_25.yaml
tests/demes-spec/test-cases/valid/size_changes_26.yaml
tests/demes-spec/test-cases/valid/size_changes_27.yaml
tests/demes-spec/test-cases/valid/size_changes_28.yaml
tests/demes-spec/test-cases/valid/size_changes_29.yaml
tests/demes-spec/test-cases/valid/size_changes_30.yaml
tests/demes-spec/test-cases/valid/size_changes_31.yaml
tests/demes-spec/test-cases/valid/size_changes_32.yaml
tests/demes-spec/test-cases/valid/size_function_defaults_01.yaml
tests/demes-spec/test-cases/valid/split_01.yaml
tests/demes-spec/test-cases/valid/split_02.yaml
tests/demes-spec/test-cases/valid/split_03.yaml
tests/demes-spec/test-cases/valid/split_04.yaml
tests/demes-spec/test-cases/valid/split_05.yaml
tests/demes-spec/test-cases/valid/split_06.yaml
tests/demes-spec/test-cases/valid/split_07.yaml
tests/demes-spec/test-cases/valid/split_08.yaml
tests/demes-spec/test-cases/valid/split_09.yaml
tests/demes-spec/test-cases/valid/split_10.yaml
tests/demes-spec/test-cases/valid/stepping_stone_model.yaml
tests/demes-spec/test-cases/valid/structure_01.yaml
tests/demes-spec/test-cases/valid/structure_02.yaml
tests/demes-spec/test-cases/valid/structure_03.yaml
tests/demes-spec/test-cases/valid/structure_04.yaml
tests/demes-spec/test-cases/valid/structure_05.yaml
tests/demes-spec/test-cases/valid/structure_06.yaml
tests/demes-spec/test-cases/valid/structure_07.yaml
tests/demes-spec/test-cases/valid/structure_08.yaml
tests/demes-spec/test-cases/valid/successors_predecessors_01.yaml
tests/demes-spec/test-cases/valid/successors_predecessors_02.yaml
tests/demes-spec/test-cases/valid/successors_predecessors_03.yaml
tests/demes-spec/test-cases/valid/successors_predecessors_04.yaml
tests/demes-spec/test-cases/valid/toplevel_defaults_deme_01.yaml
tests/demes-spec/test-cases/valid/toplevel_defaults_deme_02.yaml
tests/demes-spec/test-cases/valid/toplevel_defaults_deme_04.yaml
tests/demes-spec/test-cases/valid/toplevel_defaults_deme_05.yaml
tests/demes-spec/test-cases/valid/toplevel_defaults_epoch_01.yaml
tests/demes-spec/test-cases/valid/toplevel_defaults_epoch_02.yaml
tests/demes-spec/test-cases/valid/toplevel_defaults_epoch_03.yaml
tests/demes-spec/test-cases/valid/toplevel_defaults_epoch_04.yaml
tests/demes-spec/test-cases/valid/toplevel_defaults_epoch_05.yaml
tests/demes-spec/test-cases/valid/toplevel_defaults_epoch_06.yaml
tests/demes-spec/test-cases/valid/toplevel_defaults_migration_01.yaml
tests/demes-spec/test-cases/valid/toplevel_defaults_migration_04.yaml
tests/demes-spec/test-cases/valid/toplevel_defaults_migration_06.yaml
tests/demes-spec/test-cases/valid/toplevel_defaults_migration_07.yaml
tests/demes-spec/test-cases/valid/toplevel_defaults_migration_08.yaml
tests/demes-spec/test-cases/valid/toplevel_defaults_migration_09.yaml
tests/demes-spec/test-cases/valid/toplevel_defaults_pulse_01.yaml
tests/demes-spec/test-cases/valid/toplevel_defaults_pulse_02.yaml
tests/demes-spec/test-cases/valid/toplevel_defaults_pulse_03.yaml
tests/demes-spec/test-cases/valid/toplevel_defaults_pulse_04.yaml
tests/demes-spec/test-cases/valid/toplevel_metadata_01.yaml
tests/demes-spec/test-cases/valid/unicode_deme_name_01.yaml
tests/demes-spec/test-cases/valid/unicode_deme_name_02.yaml
tests/demes-spec/test-cases/valid/unicode_deme_name_03.yaml
tests/demes-spec/test-cases/valid/unicode_deme_name_04.yaml
tests_with_cpp/CMakeLists.txt
tests_with_cpp/custom_additive.cc
tests_with_cpp/custom_stateless_genotype.cc
tests_with_cpp/ezparams.py
tests_with_cpp/gsl_error.cc
tests_with_cpp/ll_snowdrift.cc
tests_with_cpp/snowdrift.py
tests_with_cpp/test_GSLerror.py
tests_with_cpp/test_custom_stateless_fitness.py
tests_with_cpp/test_stateful_fitness.py