CMakeLists.txt
COPYING
MANIFEST.in
README.rst
configure
setup.py
setup.py.in
doc/Makefile
doc/conf.py
doc/conf.py.in
doc/fwdpp.doxygen
doc/fwdpy11.doxygen
doc/index.rst
doc/advanced/heritability.rst
doc/advanced/manip.rst
doc/advanced/mpi.rst
doc/advanced/mpi2.rst
doc/examples/DataMatrix.rst
doc/examples/customgvalue.rst
doc/examples/parallel_simulation.rst
doc/examples/parentage.rst
doc/examples/processingpops.rst
doc/examples/qtrait.rst
doc/examples/sampling.rst
doc/examples/stateful_fitness.rst
doc/pages/binary.rst
doc/pages/changelog.rst
doc/pages/conventions.rst
doc/pages/definitions.rst
doc/pages/deprecated.rst
doc/pages/developers.rst
doc/pages/fixations.rst
doc/pages/geneticvalues.rst
doc/pages/manip_mutations.rst
doc/pages/model_params.rst
doc/pages/pickling.rst
doc/pages/popobjects.rst
doc/pages/pubs.rst
doc/pages/recorders.rst
doc/pages/regions.rst
doc/pages/rng.rst
doc/pages/todo.rst
doc/pages/ts.rst
doc/pages/tsdetails.rst
doc/pages/tsoverview.rst
doc/pages/tstypes.rst
doc/pages/types.rst
doc/pages/upgrade_path.rst
doc/performance/optimization.rst
doc/performance/processingpops_np.rst
fwdpy11/CMakeLists.txt
fwdpy11/MlocusPop.py
fwdpy11/SlocusPop.py
fwdpy11/SlocusPopGeneralMutVec.py
fwdpy11/__init__.py
fwdpy11/__main__.py
fwdpy11/_dev.py
fwdpy11/_regions.py
fwdpy11/_tables_to_msprime.py
fwdpy11/_version.py
fwdpy11/demography.py
fwdpy11/ezparams.py
fwdpy11/internal.py
fwdpy11/model_params.py
fwdpy11/temporal_samplers.py
fwdpy11/wright_fisher.py
fwdpy11/wright_fisher_ts.py
fwdpy11.egg-info/PKG-INFO
fwdpy11.egg-info/SOURCES.txt
fwdpy11.egg-info/dependency_links.txt
fwdpy11.egg-info/not-zip-safe
fwdpy11.egg-info/requires.txt
fwdpy11.egg-info/top_level.txt
fwdpy11/headers/fwdpp/examples/calculate_fitnesses.hpp
fwdpy11/headers/fwdpp/examples/common_ind.hpp
fwdpy11/headers/fwdpp/examples/confirm_mutation_counts.hpp
fwdpy11/headers/fwdpp/examples/evolve_generation_ts.hpp
fwdpy11/headers/fwdpp/examples/simplify_tables.hpp
fwdpy11/headers/fwdpp/fwdpp/data_matrix.hpp
fwdpy11/headers/fwdpp/fwdpp/debug.hpp
fwdpy11/headers/fwdpp/fwdpp/diploid.hh
fwdpy11/headers/fwdpp/fwdpp/fitness_models.hpp
fwdpy11/headers/fwdpp/fwdpp/forward_types.hpp
fwdpy11/headers/fwdpp/fwdpp/forward_types_serialization.hpp
fwdpy11/headers/fwdpp/fwdpp/fwd_functional.hpp
fwdpy11/headers/fwdpp/fwdpp/general_rec_variation.hpp
fwdpy11/headers/fwdpp/fwdpp/insertion_policies.hpp
fwdpy11/headers/fwdpp/fwdpp/interlocus_recombination.hpp
fwdpy11/headers/fwdpp/fwdpp/mutate_recombine.hpp
fwdpy11/headers/fwdpp/fwdpp/poisson_xover.hpp
fwdpy11/headers/fwdpp/fwdpp/recbinder.hpp
fwdpy11/headers/fwdpp/fwdpp/sample_diploid.hpp
fwdpy11/headers/fwdpp/fwdpp/sample_diploid.tcc
fwdpy11/headers/fwdpp/fwdpp/sampling_functions.hpp
fwdpy11/headers/fwdpp/fwdpp/sugar.hpp
fwdpy11/headers/fwdpp/fwdpp/type_traits.hpp
fwdpy11/headers/fwdpp/fwdpp/util.hpp
fwdpy11/headers/fwdpp/fwdpp/version.hpp
fwdpy11/headers/fwdpp/fwdpp/algorithm/compact_mutations.hpp
fwdpy11/headers/fwdpp/fwdpp/extensions/callbacks.hpp
fwdpy11/headers/fwdpp/fwdpp/extensions/regions.hpp
fwdpy11/headers/fwdpp/fwdpp/internal/data_matrix_details.hpp
fwdpy11/headers/fwdpp/fwdpp/internal/debug_details.hpp
fwdpy11/headers/fwdpp/fwdpp/internal/gamete_cleaner.hpp
fwdpy11/headers/fwdpp/fwdpp/internal/gsl_discrete.hpp
fwdpy11/headers/fwdpp/fwdpp/internal/ms_sampling.hpp
fwdpy11/headers/fwdpp/fwdpp/internal/multilocus_rec.hpp
fwdpy11/headers/fwdpp/fwdpp/internal/mutation_internal.hpp
fwdpy11/headers/fwdpp/fwdpp/internal/rec_gamete_updater.hpp
fwdpy11/headers/fwdpp/fwdpp/internal/recombination_common.hpp
fwdpy11/headers/fwdpp/fwdpp/internal/recycling.hpp
fwdpy11/headers/fwdpp/fwdpp/internal/sample_diploid_helpers.hpp
fwdpy11/headers/fwdpp/fwdpp/internal/sampling_functions_details.hpp
fwdpy11/headers/fwdpp/fwdpp/internal/type_traits.hpp
fwdpy11/headers/fwdpp/fwdpp/internal/void_t.hpp
fwdpy11/headers/fwdpp/fwdpp/io/diploid.hpp
fwdpy11/headers/fwdpp/fwdpp/io/gamete.hpp
fwdpy11/headers/fwdpp/fwdpp/io/mutation.hpp
fwdpy11/headers/fwdpp/fwdpp/io/scalar_serialization.hpp
fwdpy11/headers/fwdpp/fwdpp/io/serialize_population.hpp
fwdpy11/headers/fwdpp/fwdpp/io/detail/serialize_population.hpp
fwdpy11/headers/fwdpp/fwdpp/meta/always_false.hpp
fwdpy11/headers/fwdpp/fwdpp/sugar/GSLrng_t.hpp
fwdpy11/headers/fwdpp/fwdpp/sugar/add_mutation.hpp
fwdpy11/headers/fwdpp/fwdpp/sugar/change_neutral.hpp
fwdpy11/headers/fwdpp/fwdpp/sugar/mlocuspop.hpp
fwdpy11/headers/fwdpp/fwdpp/sugar/popgenmut.hpp
fwdpy11/headers/fwdpp/fwdpp/sugar/slocuspop.hpp
fwdpy11/headers/fwdpp/fwdpp/sugar/sugar.hpp
fwdpy11/headers/fwdpp/fwdpp/sugar/gsl/deleter.hpp
fwdpy11/headers/fwdpp/fwdpp/sugar/gsl/tags.hpp
fwdpy11/headers/fwdpp/fwdpp/sugar/poptypes/mlocuspop.hpp
fwdpy11/headers/fwdpp/fwdpp/sugar/poptypes/popbase.hpp
fwdpy11/headers/fwdpp/fwdpp/sugar/poptypes/slocuspop.hpp
fwdpy11/headers/fwdpp/fwdpp/sugar/poptypes/tags.hpp
fwdpy11/headers/fwdpp/fwdpp/tags/tags.hpp
fwdpy11/headers/fwdpp/fwdpp/ts/count_mutations.hpp
fwdpy11/headers/fwdpp/fwdpp/ts/definitions.hpp
fwdpy11/headers/fwdpp/fwdpp/ts/edge.hpp
fwdpy11/headers/fwdpp/fwdpp/ts/generate_data_matrix.hpp
fwdpy11/headers/fwdpp/fwdpp/ts/get_parent_ids.hpp
fwdpy11/headers/fwdpp/fwdpp/ts/indexed_edge.hpp
fwdpy11/headers/fwdpp/fwdpp/ts/marginal_tree.hpp
fwdpy11/headers/fwdpp/fwdpp/ts/mark_multiple_roots.hpp
fwdpy11/headers/fwdpp/fwdpp/ts/mutate_tables.hpp
fwdpy11/headers/fwdpp/fwdpp/ts/mutation_record.hpp
fwdpy11/headers/fwdpp/fwdpp/ts/node.hpp
fwdpy11/headers/fwdpp/fwdpp/ts/recycling.hpp
fwdpy11/headers/fwdpp/fwdpp/ts/remove_fixations_from_gametes.hpp
fwdpy11/headers/fwdpp/fwdpp/ts/serialization.hpp
fwdpy11/headers/fwdpp/fwdpp/ts/serialization_version.hpp
fwdpy11/headers/fwdpp/fwdpp/ts/table_collection.hpp
fwdpy11/headers/fwdpp/fwdpp/ts/table_simplifier.hpp
fwdpy11/headers/fwdpp/fwdpp/ts/tree_visitor.hpp
fwdpy11/headers/fwdpp/fwdpp/ts/detail/advance_marginal_tree_policies.hpp
fwdpy11/headers/fwdpp/fwdpp/ts/detail/generate_data_matrix_details.hpp
fwdpy11/headers/fwdpp/testsuite/fixtures/fwdpp_fixtures.hpp
fwdpy11/headers/fwdpp/testsuite/fixtures/sugar_fixtures.hpp
fwdpy11/headers/fwdpp/testsuite/util/custom_dip.hpp
fwdpy11/headers/fwdpp/testsuite/util/quick_evolve_sugar.hpp
fwdpy11/headers/fwdpy11/multilocus.hpp
fwdpy11/headers/fwdpy11/rng.hpp
fwdpy11/headers/fwdpy11/samplers.hpp
fwdpy11/headers/fwdpy11/serialization.hpp
fwdpy11/headers/fwdpy11/sim_functions.hpp
fwdpy11/headers/fwdpy11/evolve/MlocusPop_generation.hpp
fwdpy11/headers/fwdpy11/evolve/SlocusPop_generation.hpp
fwdpy11/headers/fwdpy11/evolvets/evolve_generation_ts.hpp
fwdpy11/headers/fwdpy11/evolvets/recorders.hpp
fwdpy11/headers/fwdpy11/evolvets/sample_recorder_types.hpp
fwdpy11/headers/fwdpy11/evolvets/samplerecorder.hpp
fwdpy11/headers/fwdpy11/evolvets/simplify_tables.hpp
fwdpy11/headers/fwdpy11/genetic_values/GeneticValueToFitness.hpp
fwdpy11/headers/fwdpy11/genetic_values/MlocusAdditive.hpp
fwdpy11/headers/fwdpy11/genetic_values/MlocusGBR.hpp
fwdpy11/headers/fwdpy11/genetic_values/MlocusMult.hpp
fwdpy11/headers/fwdpy11/genetic_values/MlocusPopGeneticValue.hpp
fwdpy11/headers/fwdpy11/genetic_values/MlocusPopGeneticValueWithMapping.hpp
fwdpy11/headers/fwdpy11/genetic_values/SlocusAdditive.hpp
fwdpy11/headers/fwdpy11/genetic_values/SlocusGBR.hpp
fwdpy11/headers/fwdpy11/genetic_values/SlocusMult.hpp
fwdpy11/headers/fwdpy11/genetic_values/SlocusPopGeneticValue.hpp
fwdpy11/headers/fwdpy11/genetic_values/SlocusPopGeneticValueWithMapping.hpp
fwdpy11/headers/fwdpy11/genetic_values/default_update.hpp
fwdpy11/headers/fwdpy11/genetic_values/noise.hpp
fwdpy11/headers/fwdpy11/genetic_values/details/GBR.hpp
fwdpy11/headers/fwdpy11/genetic_values/details/mlocus_aggregators.hpp
fwdpy11/headers/fwdpy11/genetic_values/details/pickle_GBR.hpp
fwdpy11/headers/fwdpy11/genetic_values/details/pickle_additive.hpp
fwdpy11/headers/fwdpy11/genetic_values/details/pickle_multiplicative.hpp
fwdpy11/headers/fwdpy11/genetic_values/fwdpp_wrappers/fwdpp_mlocus_gvalue.hpp
fwdpy11/headers/fwdpy11/genetic_values/fwdpp_wrappers/fwdpp_slocus_gvalue.hpp
fwdpy11/headers/fwdpy11/gsl/gsl_error_handler_wrapper.hpp
fwdpy11/headers/fwdpy11/policies/mutation.hpp
fwdpy11/headers/fwdpy11/sampling/data_matrix_functions.hpp
fwdpy11/headers/fwdpy11/serialization/Diploid.hpp
fwdpy11/headers/fwdpy11/serialization/Mutation.hpp
fwdpy11/headers/fwdpy11/serialization/diploid_metadata.hpp
fwdpy11/headers/fwdpy11/types/Diploid.hpp
fwdpy11/headers/fwdpy11/types/MlocusPop.hpp
fwdpy11/headers/fwdpy11/types/Mutation.hpp
fwdpy11/headers/fwdpy11/types/Population.hpp
fwdpy11/headers/fwdpy11/types/PyPopulation.hpp
fwdpy11/headers/fwdpy11/types/SlocusPop.hpp
fwdpy11/headers/fwdpy11/types/create_pops.hpp
fwdpy11/headers/fwdpy11/types/typedefs.hpp
fwdpy11/src/_Population.cc
fwdpy11/src/_Populations.cc
fwdpy11/src/_gslrng.cc
fwdpy11/src/_init.cc
fwdpy11/src/_opaque_diploids.cc
fwdpy11/src/_opaque_gametes.cc
fwdpy11/src/_opaque_mutations.cc
fwdpy11/src/fwdpp_extensions.cc
fwdpy11/src/fwdpp_types.cc
fwdpy11/src/fwdpy11_sampling.cc
fwdpy11/src/fwdpy11_types.cc
fwdpy11/src/fwdpy11_util.cc
fwdpy11/src/genetic_value_noise.cc
fwdpy11/src/genetic_values.cc
fwdpy11/src/get_individuals.hpp
fwdpy11/src/gsl_random.cc
fwdpy11/src/multilocus.cc
fwdpy11/src/ts.cc
fwdpy11/src/ts_from_msprime.cc
fwdpy11/src/tsrecorders.cc
fwdpy11/src/wright_fisher_mlocus.cc
fwdpy11/src/wright_fisher_slocus.cc
fwdpy11/src/wright_fisher_slocus_ts.cc
m4/ax_cxx_compile_stdxx_11.m4
m4/python.m4
tests/.rendered.custom_additive.cpp
tests/.rendered.custom_stateless_genotype.cpp
tests/.rendered.fixation_properties.cpp
tests/.rendered.gsl_error.cpp
tests/.rendered.pickling_composed_classes.cpp
tests/.rendered.pickling_cpp.cpp
tests/.rendered.snowdrift.cpp
tests/MeanFitness.pyx
tests/custom_additive.cpp
tests/custom_stateless_genotype.cpp
tests/fixation_properties.cpp
tests/gsl_error.cpp
tests/mean_sel_coeff.pyx
tests/pickling_composed_classes.cpp
tests/pickling_cpp.cpp
tests/quick_pops.py
tests/snowdrift.cpp
tests/test_DataMatrix.py
tests/test_GSLerror.py
tests/test_MlocusPop.py
tests/test_ModelParams.py
tests/test_Mutation.py
tests/test_SampleRecorder.py
tests/test_SlocusPop.py
tests/test_add_mutation.py
tests/test_custom_stateless_fitness.py
tests/test_fixation_properties.py
tests/test_fwdpp_types.py
tests/test_genetic_value_noise.py
tests/test_genetic_value_to_fitness.py
tests/test_genetic_values.py
tests/test_internal.py
tests/test_multilocus.py
tests/test_mutation_labels.py
tests/test_numpy.py
tests/test_opaque.py
tests/test_pickling.py
tests/test_pickling_composed_classes.py
tests/test_popobject_create.py
tests/test_regions.py
tests/test_simple_parallel.py
tests/test_stateful_fitness.py
tests/test_tree_sequences.py
tests/test_ts_from_msprime.py
tests/test_util.py
tests/test_wright_fisher.py