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deployment/docker/Dockerfile
deployment/linux_wheels/Dockerfile
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doc/short_vignettes/initpops_vignette.md
doc/short_vignettes/mutationdominance_vignette.md
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examples/COPYING
examples/README.rst
examples/discrete_demography/IM.py
examples/discrete_demography/localadaptation.py
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examples/gss_divergent_optima/gss_divergent_optima.py
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examples/python_genetic_values/pysnowdrift.py
examples/tskit/precapitate.py
examples/tskit/recapitate.py
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fwdpy11/genetic_map_unit.py
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fwdpy11/mutation_dominance.py
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fwdpy11.egg-info/PKG-INFO
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fwdpy11/demographic_models/IM.py
fwdpy11/demographic_models/__init__.py
fwdpy11/demographic_models/demographic_model_details.py
fwdpy11/demographic_models/human.py
fwdpy11/headers/fwdpp/examples/K_linked_regions_extensions.cc
fwdpy11/headers/fwdpp/examples/calculate_fitnesses.hpp
fwdpy11/headers/fwdpp/examples/common_ind.hpp
fwdpy11/headers/fwdpp/examples/confirm_mutation_counts.hpp
fwdpy11/headers/fwdpp/examples/custom_diploid_example.cc
fwdpy11/headers/fwdpp/examples/custom_mutation_example.hpp
fwdpy11/headers/fwdpp/examples/custom_mutation_serialization_example.hpp
fwdpy11/headers/fwdpp/examples/diploid_example.cc
fwdpy11/headers/fwdpp/examples/diploid_fixed_sh_ind.cc
fwdpy11/headers/fwdpp/examples/diploid_ind.cc
fwdpy11/headers/fwdpp/examples/edge_buffering.cc
fwdpy11/headers/fwdpp/examples/evolve_generation_ts.hpp
fwdpy11/headers/fwdpp/examples/genetic_map_example.cc
fwdpy11/headers/fwdpp/examples/juvenile_migration.cc
fwdpy11/headers/fwdpp/examples/load_table_collection.cc
fwdpy11/headers/fwdpp/examples/rng_example.cc
fwdpy11/headers/fwdpp/examples/simplify_tables.hpp
fwdpy11/headers/fwdpp/examples/tree_sequence_examples_common.cc
fwdpy11/headers/fwdpp/examples/tree_sequence_examples_common.hpp
fwdpy11/headers/fwdpp/examples/tree_sequence_examples_types.hpp
fwdpy11/headers/fwdpp/examples/wfevolvets.cc
fwdpy11/headers/fwdpp/examples/wfevolvets.hpp
fwdpy11/headers/fwdpp/examples/wfts_integration_test.cc
fwdpy11/headers/fwdpp/examples/unused_source/wfts_overlapping_generations_dynamic_indexing.cc
fwdpy11/headers/fwdpp/examples/unused_source/wfts_overlapping_generations_dynamic_indexing_with_mutation.cc
fwdpy11/headers/fwdpp/fwdpp/GSLrng_t.hpp
fwdpy11/headers/fwdpp/fwdpp/data_matrix.hpp
fwdpy11/headers/fwdpp/fwdpp/debug.hpp
fwdpy11/headers/fwdpp/fwdpp/diploid_population.hpp
fwdpy11/headers/fwdpp/fwdpp/fitness_models.hpp
fwdpy11/headers/fwdpp/fwdpp/forward_types.hpp
fwdpy11/headers/fwdpp/fwdpp/forward_types_serialization.hpp
fwdpy11/headers/fwdpp/fwdpp/fwd_functional.hpp
fwdpy11/headers/fwdpp/fwdpp/gsl_discrete.hpp
fwdpy11/headers/fwdpp/fwdpp/insertion_policies.hpp
fwdpy11/headers/fwdpp/fwdpp/mutate_recombine.hpp
fwdpy11/headers/fwdpp/fwdpp/popgenmut.hpp
fwdpy11/headers/fwdpp/fwdpp/recbinder.hpp
fwdpy11/headers/fwdpp/fwdpp/sample_diploid.hpp
fwdpy11/headers/fwdpp/fwdpp/sampling_functions.hpp
fwdpy11/headers/fwdpp/fwdpp/simparams.hpp
fwdpy11/headers/fwdpp/fwdpp/type_traits.hpp
fwdpy11/headers/fwdpp/fwdpp/util.hpp
fwdpy11/headers/fwdpp/fwdpp/version.hpp
fwdpy11/headers/fwdpp/fwdpp/algorithm/compact_mutations.hpp
fwdpy11/headers/fwdpp/fwdpp/extensions/callbacks.hpp
fwdpy11/headers/fwdpp/fwdpp/extensions/regions.hpp
fwdpy11/headers/fwdpp/fwdpp/fundamental_types/haploid_genome.hpp
fwdpy11/headers/fwdpp/fwdpp/fundamental_types/mutation_base.hpp
fwdpy11/headers/fwdpp/fwdpp/fundamental_types/typedefs.hpp
fwdpy11/headers/fwdpp/fwdpp/genetic_map/binomial_interval.hpp
fwdpy11/headers/fwdpp/fwdpp/genetic_map/binomial_point.hpp
fwdpy11/headers/fwdpp/fwdpp/genetic_map/fixed_number_crossovers.hpp
fwdpy11/headers/fwdpp/fwdpp/genetic_map/genetic_map.hpp
fwdpy11/headers/fwdpp/fwdpp/genetic_map/genetic_map_unit.hpp
fwdpy11/headers/fwdpp/fwdpp/genetic_map/poisson_interval.hpp
fwdpy11/headers/fwdpp/fwdpp/genetic_map/poisson_point.hpp
fwdpy11/headers/fwdpp/fwdpp/gsl/deleter.hpp
fwdpy11/headers/fwdpp/fwdpp/gsl/tags.hpp
fwdpy11/headers/fwdpp/fwdpp/internal/data_matrix_details.hpp
fwdpy11/headers/fwdpp/fwdpp/internal/debug_details.hpp
fwdpy11/headers/fwdpp/fwdpp/internal/haploid_genome_cleaner.hpp
fwdpy11/headers/fwdpp/fwdpp/internal/mutation_internal.hpp
fwdpy11/headers/fwdpp/fwdpp/internal/rec_gamete_updater.hpp
fwdpy11/headers/fwdpp/fwdpp/internal/recombination_common.hpp
fwdpy11/headers/fwdpp/fwdpp/internal/sample_diploid_helpers.hpp
fwdpy11/headers/fwdpp/fwdpp/internal/sampling_functions_details.hpp
fwdpy11/headers/fwdpp/fwdpp/internal/type_traits.hpp
fwdpy11/headers/fwdpp/fwdpp/internal/util.hpp
fwdpy11/headers/fwdpp/fwdpp/internal/void_t.hpp
fwdpy11/headers/fwdpp/fwdpp/io/diploid.hpp
fwdpy11/headers/fwdpp/fwdpp/io/haploid_genome.hpp
fwdpy11/headers/fwdpp/fwdpp/io/mutation.hpp
fwdpy11/headers/fwdpp/fwdpp/io/scalar_serialization.hpp
fwdpy11/headers/fwdpp/fwdpp/io/serialize_population.hpp
fwdpy11/headers/fwdpp/fwdpp/io/detail/serialize_population.hpp
fwdpy11/headers/fwdpp/fwdpp/meta/always_false.hpp
fwdpy11/headers/fwdpp/fwdpp/poptypes/diploid_population.hpp
fwdpy11/headers/fwdpp/fwdpp/poptypes/popbase.hpp
fwdpy11/headers/fwdpp/fwdpp/poptypes/tags.hpp
fwdpy11/headers/fwdpp/fwdpp/simfunctions/recycling.hpp
fwdpy11/headers/fwdpp/fwdpp/sugar/add_mutation.hpp
fwdpy11/headers/fwdpp/fwdpp/sugar/change_neutral.hpp
fwdpy11/headers/fwdpp/fwdpp/tags/tags.hpp
fwdpy11/headers/fwdpp/fwdpp/ts/count_mutations.hpp
fwdpy11/headers/fwdpp/fwdpp/ts/decapitate.hpp
fwdpy11/headers/fwdpp/fwdpp/ts/definitions.hpp
fwdpy11/headers/fwdpp/fwdpp/ts/edge.hpp
fwdpy11/headers/fwdpp/fwdpp/ts/exceptions.hpp
fwdpy11/headers/fwdpp/fwdpp/ts/generate_data_matrix.hpp
fwdpy11/headers/fwdpp/fwdpp/ts/generate_offspring.hpp
fwdpy11/headers/fwdpp/fwdpp/ts/get_parent_ids.hpp
fwdpy11/headers/fwdpp/fwdpp/ts/make_simplifier_state.hpp
fwdpy11/headers/fwdpp/fwdpp/ts/marginal_tree.hpp
fwdpy11/headers/fwdpp/fwdpp/ts/marginal_tree_functions.hpp
fwdpy11/headers/fwdpp/fwdpp/ts/mark_multiple_roots.hpp
fwdpy11/headers/fwdpp/fwdpp/ts/mutate_tables.hpp
fwdpy11/headers/fwdpp/fwdpp/ts/mutation_record.hpp
fwdpy11/headers/fwdpp/fwdpp/ts/mutation_tools.hpp
fwdpy11/headers/fwdpp/fwdpp/ts/node.hpp
fwdpy11/headers/fwdpp/fwdpp/ts/recording.hpp
fwdpy11/headers/fwdpp/fwdpp/ts/recycling.hpp
fwdpy11/headers/fwdpp/fwdpp/ts/remove_fixations_from_gametes.hpp
fwdpy11/headers/fwdpp/fwdpp/ts/serialization.hpp
fwdpy11/headers/fwdpp/fwdpp/ts/serialization_version.hpp
fwdpy11/headers/fwdpp/fwdpp/ts/simplification_flags.hpp
fwdpy11/headers/fwdpp/fwdpp/ts/simplify_tables.hpp
fwdpy11/headers/fwdpp/fwdpp/ts/simplify_tables_output.hpp
fwdpy11/headers/fwdpp/fwdpp/ts/site.hpp
fwdpy11/headers/fwdpp/fwdpp/ts/site_visitor.hpp
fwdpy11/headers/fwdpp/fwdpp/ts/std_table_collection.hpp
fwdpy11/headers/fwdpp/fwdpp/ts/table_collection.hpp
fwdpy11/headers/fwdpp/fwdpp/ts/table_collection_functions.hpp
fwdpy11/headers/fwdpp/fwdpp/ts/table_simplifier.hpp
fwdpy11/headers/fwdpp/fwdpp/ts/tree_visitor.hpp
fwdpy11/headers/fwdpp/fwdpp/ts/visit_sites.hpp
fwdpy11/headers/fwdpp/fwdpp/ts/detail/advance_marginal_tree_policies.hpp
fwdpy11/headers/fwdpp/fwdpp/ts/detail/generate_data_matrix_details.hpp
fwdpy11/headers/fwdpp/fwdpp/ts/marginal_tree_functions/children.hpp
fwdpy11/headers/fwdpp/fwdpp/ts/marginal_tree_functions/node_traversal_order.hpp
fwdpy11/headers/fwdpp/fwdpp/ts/marginal_tree_functions/node_traversal_preorder.hpp
fwdpy11/headers/fwdpp/fwdpp/ts/marginal_tree_functions/nodes.hpp
fwdpy11/headers/fwdpp/fwdpp/ts/marginal_tree_functions/roots.hpp
fwdpy11/headers/fwdpp/fwdpp/ts/marginal_tree_functions/samples.hpp
fwdpy11/headers/fwdpp/fwdpp/ts/marginal_tree_functions/statistics.hpp
fwdpy11/headers/fwdpp/fwdpp/ts/recording/diploid_offspring.hpp
fwdpy11/headers/fwdpp/fwdpp/ts/recording/edge_buffer.hpp
fwdpy11/headers/fwdpp/fwdpp/ts/recording/mutations.hpp
fwdpy11/headers/fwdpp/fwdpp/ts/simplification/simplification.hpp
fwdpy11/headers/fwdpp/fwdpp/types/mutation.hpp
fwdpy11/headers/fwdpp/fwdpp/types/nested_forward_lists.hpp
fwdpy11/headers/fwdpp/fwdpp/util/abstract_cloneable.hpp
fwdpy11/headers/fwdpp/fwdpp/util/enum_bitflags.hpp
fwdpy11/headers/fwdpp/fwdpp/util/named_type.hpp
fwdpy11/headers/fwdpp/fwdpp/util/nested_forward_lists.hpp
fwdpy11/headers/fwdpp/fwdpp/util/validators.hpp
fwdpy11/headers/fwdpp/fwdpp/util/wrapped_range.hpp
fwdpy11/headers/fwdpp/src/fwdppConfig.cc
fwdpy11/headers/fwdpp/testsuite/fixtures/fwdpp_fixtures.hpp
fwdpy11/headers/fwdpp/testsuite/fixtures/rng_fixture.hpp
fwdpy11/headers/fwdpp/testsuite/fixtures/sugar_fixtures.cc
fwdpy11/headers/fwdpp/testsuite/fixtures/sugar_fixtures.hpp
fwdpy11/headers/fwdpp/testsuite/integration/extensions_integration_tests.cc
fwdpy11/headers/fwdpp/testsuite/integration/extensions_regionsIntegrationTest.cc
fwdpy11/headers/fwdpp/testsuite/integration/sugar_integration_tests.cc
fwdpy11/headers/fwdpp/testsuite/integration/sugar_singlepopTest.cc
fwdpy11/headers/fwdpp/testsuite/integration/sugar_singlepop_custom_diploidTest.cc
fwdpy11/headers/fwdpp/testsuite/tree_sequences/empty_table_collection.hpp
fwdpy11/headers/fwdpp/testsuite/tree_sequences/independent_implementations.cc
fwdpy11/headers/fwdpp/testsuite/tree_sequences/independent_implementations.hpp
fwdpy11/headers/fwdpp/testsuite/tree_sequences/preorder_adl.hpp
fwdpy11/headers/fwdpp/testsuite/tree_sequences/simple_table_collection.hpp
fwdpy11/headers/fwdpp/testsuite/tree_sequences/simple_table_collection_infinite_sites.hpp
fwdpy11/headers/fwdpp/testsuite/tree_sequences/simple_table_collection_polytomy.hpp
fwdpy11/headers/fwdpp/testsuite/tree_sequences/test_ancestry_list.cc
fwdpy11/headers/fwdpp/testsuite/tree_sequences/test_decapitate.cc
fwdpy11/headers/fwdpp/testsuite/tree_sequences/test_diploid_recording.cc
fwdpy11/headers/fwdpp/testsuite/tree_sequences/test_edge_buffering_std_table_collection.cc
fwdpy11/headers/fwdpp/testsuite/tree_sequences/test_generate_data_matrix.cc
fwdpy11/headers/fwdpp/testsuite/tree_sequences/test_generate_offspring.cc
fwdpy11/headers/fwdpp/testsuite/tree_sequences/test_marginal_tree.cc
fwdpy11/headers/fwdpp/testsuite/tree_sequences/test_marginal_tree_statistics.cc
fwdpy11/headers/fwdpp/testsuite/tree_sequences/test_node_children_traversal.cc
fwdpy11/headers/fwdpp/testsuite/tree_sequences/test_node_traversal_order_adl.cc
fwdpy11/headers/fwdpp/testsuite/tree_sequences/test_preorder_node_traversal.cc
fwdpy11/headers/fwdpp/testsuite/tree_sequences/test_root_traversal.cc
fwdpy11/headers/fwdpp/testsuite/tree_sequences/test_sample_traversal.cc
fwdpy11/headers/fwdpp/testsuite/tree_sequences/test_site_visitor.cc
fwdpy11/headers/fwdpp/testsuite/tree_sequences/test_table_collection.cc
fwdpy11/headers/fwdpp/testsuite/tree_sequences/test_tree_visitor.cc
fwdpy11/headers/fwdpp/testsuite/tree_sequences/test_visit_sites.cc
fwdpy11/headers/fwdpp/testsuite/tree_sequences/tree_sequence_tests.cc
fwdpy11/headers/fwdpp/testsuite/tree_sequences/tskit_utils.cc
fwdpy11/headers/fwdpp/testsuite/tree_sequences/tskit_utils.hpp
fwdpy11/headers/fwdpp/testsuite/tree_sequences/wfevolve_table_collection.hpp
fwdpy11/headers/fwdpp/testsuite/tree_sequences/wfevolve_table_collection_fxns.cc
fwdpy11/headers/fwdpp/testsuite/unit/extensions_callbacksTest.cc
fwdpy11/headers/fwdpp/testsuite/unit/extensions_regionsTest.cc
fwdpy11/headers/fwdpp/testsuite/unit/extensions_unit_test.cc
fwdpy11/headers/fwdpp/testsuite/unit/fwdpp_unit_tests.cc
fwdpy11/headers/fwdpp/testsuite/unit/gameteTest.cc
fwdpy11/headers/fwdpp/testsuite/unit/gamete_cleanerTest.cc
fwdpy11/headers/fwdpp/testsuite/unit/genetic_map_tests.cc
fwdpy11/headers/fwdpp/testsuite/unit/mutateTest.cc
fwdpy11/headers/fwdpp/testsuite/unit/serializationTest.cc
fwdpy11/headers/fwdpp/testsuite/unit/siteDepFitnessTest.cc
fwdpy11/headers/fwdpp/testsuite/unit/sugar_GSLrngTest.cc
fwdpy11/headers/fwdpp/testsuite/unit/sugar_add_mutationTest.cc
fwdpy11/headers/fwdpp/testsuite/unit/sugar_change_neutralTest.cc
fwdpy11/headers/fwdpp/testsuite/unit/sugar_popgenmut.cc
fwdpy11/headers/fwdpp/testsuite/unit/sugar_unit_tests.cc
fwdpy11/headers/fwdpp/testsuite/unit/test_enum_bitflags.cc
fwdpy11/headers/fwdpp/testsuite/unit/test_genetic_map.cc
fwdpy11/headers/fwdpp/testsuite/unit/test_mutate_recombine.cc
fwdpy11/headers/fwdpp/testsuite/unit/test_nested_forward_lists.cc
fwdpy11/headers/fwdpp/testsuite/unit/test_simparams.cc
fwdpy11/headers/fwdpp/testsuite/unit/test_type_traits.cc
fwdpy11/headers/fwdpp/testsuite/unit/test_validators.cc
fwdpy11/headers/fwdpp/testsuite/unit/test_wrapped_range.cc
fwdpy11/headers/fwdpp/testsuite/unit/utilTest.cc
fwdpy11/headers/fwdpp/testsuite/util/custom_dip.hpp
fwdpy11/headers/fwdpp/testsuite/util/quick_evolve_sugar.hpp
fwdpy11/headers/fwdpy11/rng.hpp
fwdpy11/headers/fwdpy11/samplers.hpp
fwdpy11/headers/fwdpy11/serialization.hpp
fwdpy11/headers/fwdpy11/discrete_demography/DiscreteDemography.hpp
fwdpy11/headers/fwdpy11/discrete_demography/DiscreteDemographyState.hpp
fwdpy11/headers/fwdpy11/discrete_demography/MassMigration.hpp
fwdpy11/headers/fwdpy11/discrete_demography/MigrationMatrix.hpp
fwdpy11/headers/fwdpy11/discrete_demography/SetDemeSize.hpp
fwdpy11/headers/fwdpy11/discrete_demography/SetExponentialGrowth.hpp
fwdpy11/headers/fwdpy11/discrete_demography/SetMigrationRates.hpp
fwdpy11/headers/fwdpy11/discrete_demography/SetSelfingRate.hpp
fwdpy11/headers/fwdpy11/discrete_demography/constants.hpp
fwdpy11/headers/fwdpy11/discrete_demography/current_event_state.hpp
fwdpy11/headers/fwdpy11/discrete_demography/exceptions.hpp
fwdpy11/headers/fwdpy11/discrete_demography/simulation.hpp
fwdpy11/headers/fwdpy11/discrete_demography/simulation/apply_mass_migrations.hpp
fwdpy11/headers/fwdpy11/discrete_demography/simulation/build_migration_lookup.hpp
fwdpy11/headers/fwdpy11/discrete_demography/simulation/deme_properties.hpp
fwdpy11/headers/fwdpy11/discrete_demography/simulation/deme_property_types.hpp
fwdpy11/headers/fwdpy11/discrete_demography/simulation/detail.hpp
fwdpy11/headers/fwdpy11/discrete_demography/simulation/functions.hpp
fwdpy11/headers/fwdpy11/discrete_demography/simulation/get_max_number_of_demes.hpp
fwdpy11/headers/fwdpy11/discrete_demography/simulation/mating_event_type.hpp
fwdpy11/headers/fwdpy11/discrete_demography/simulation/migration_lookup.hpp
fwdpy11/headers/fwdpy11/discrete_demography/simulation/multideme_fitness_bookmark.hpp
fwdpy11/headers/fwdpy11/discrete_demography/simulation/multideme_fitness_lookups.hpp
fwdpy11/headers/fwdpy11/discrete_demography/simulation/pick_parents.hpp
fwdpy11/headers/fwdpy11/evolvets/SampleRecorder.hpp
fwdpy11/headers/fwdpy11/evolvets/evolve_generation_ts.hpp
fwdpy11/headers/fwdpy11/evolvets/recorders.hpp
fwdpy11/headers/fwdpy11/evolvets/sample_recorder_types.hpp
fwdpy11/headers/fwdpy11/evolvets/simplify_tables.hpp
fwdpy11/headers/fwdpy11/genetic_value_data/genetic_value_data.hpp
fwdpy11/headers/fwdpy11/genetic_value_noise/GeneticValueNoise.hpp
fwdpy11/headers/fwdpy11/genetic_value_noise/NoNoise.hpp
fwdpy11/headers/fwdpy11/genetic_value_to_fitness/GSSmo.hpp
fwdpy11/headers/fwdpy11/genetic_value_to_fitness/GeneticValueIsFitness.hpp
fwdpy11/headers/fwdpy11/genetic_value_to_fitness/GeneticValueIsTrait.hpp
fwdpy11/headers/fwdpy11/genetic_value_to_fitness/GeneticValueToFitnessMap.hpp
fwdpy11/headers/fwdpy11/genetic_value_to_fitness/MultivariateGSSmo.hpp
fwdpy11/headers/fwdpy11/genetic_value_to_fitness/Optimum.hpp
fwdpy11/headers/fwdpy11/genetic_value_to_fitness/PleiotropicOptima.hpp
fwdpy11/headers/fwdpy11/genetic_values/DiploidGeneticValue.hpp
fwdpy11/headers/fwdpy11/genetic_values/DiploidMultivariateEffectsStrictAdditive.hpp
fwdpy11/headers/fwdpy11/genetic_values/default_update.hpp
fwdpy11/headers/fwdpy11/genetic_values/dgvalue_pointer_vector.hpp
fwdpy11/headers/fwdpy11/genetic_values/fwdpp_wrappers/fwdpp_genetic_value.hpp
fwdpy11/headers/fwdpy11/gsl/gsl_error_handler_wrapper.hpp
fwdpy11/headers/fwdpy11/mutation_dominance/ExponentialDominance.hpp
fwdpy11/headers/fwdpy11/mutation_dominance/LargeEffectExponentiallyRecessive.hpp
fwdpy11/headers/fwdpy11/mutation_dominance/MutationDominance.hpp
fwdpy11/headers/fwdpy11/mutation_dominance/UniformDominance.hpp
fwdpy11/headers/fwdpy11/numpy/array.hpp
fwdpy11/headers/fwdpy11/policies/mutation.hpp
fwdpy11/headers/fwdpy11/regions/ConstantS.hpp
fwdpy11/headers/fwdpy11/regions/ExpS.hpp
fwdpy11/headers/fwdpy11/regions/GammaS.hpp
fwdpy11/headers/fwdpy11/regions/GaussianS.hpp
fwdpy11/headers/fwdpy11/regions/GeneticMapUnit.hpp
fwdpy11/headers/fwdpy11/regions/LogNormalS.hpp
fwdpy11/headers/fwdpy11/regions/MultivariateGaussianEffects.hpp
fwdpy11/headers/fwdpy11/regions/MutationRegions.hpp
fwdpy11/headers/fwdpy11/regions/RecombinationRegions.hpp
fwdpy11/headers/fwdpy11/regions/Region.hpp
fwdpy11/headers/fwdpy11/regions/Sregion.hpp
fwdpy11/headers/fwdpy11/regions/UniformS.hpp
fwdpy11/headers/fwdpy11/regions/mvDES.hpp
fwdpy11/headers/fwdpy11/serialization/Diploid.hpp
fwdpy11/headers/fwdpy11/serialization/Mutation.hpp
fwdpy11/headers/fwdpy11/serialization/backwards_compat.hpp
fwdpy11/headers/fwdpy11/serialization/diploid_metadata.hpp
fwdpy11/headers/fwdpy11/types/Diploid.hpp
fwdpy11/headers/fwdpy11/types/DiploidPopulation.hpp
fwdpy11/headers/fwdpy11/types/Mutation.hpp
fwdpy11/headers/fwdpy11/types/Population.hpp
fwdpy11/headers/fwdpy11/util/array_proxy.hpp
fwdpy11/headers/fwdpy11/util/clone_cloneable.hpp
fwdpy11/headers/fwdpy11/util/convert_lists.hpp
fwdpy11/src/_fwdpy11.cc
fwdpy11/src/array_proxies/init.cc
fwdpy11/src/discrete_demography/DiscreteDemography.cc
fwdpy11/src/discrete_demography/MassMigration.cc
fwdpy11/src/discrete_demography/MigrationMatrix.cc
fwdpy11/src/discrete_demography/SetDemeSize.cc
fwdpy11/src/discrete_demography/SetExponentialGrowth.cc
fwdpy11/src/discrete_demography/SetMigrationRates.cc
fwdpy11/src/discrete_demography/SetSelfingRate.cc
fwdpy11/src/discrete_demography/exceptions.cc
fwdpy11/src/discrete_demography/init.cc
fwdpy11/src/evolve_population/_evolvets.cc
fwdpy11/src/evolve_population/cleanup_metadata.cc
fwdpy11/src/evolve_population/cleanup_metadata.hpp
fwdpy11/src/evolve_population/diploid_pop_fitness.cc
fwdpy11/src/evolve_population/diploid_pop_fitness.hpp
fwdpy11/src/evolve_population/evolvets.cc
fwdpy11/src/evolve_population/evolvets.hpp
fwdpy11/src/evolve_population/index_and_count_mutations.cc
fwdpy11/src/evolve_population/index_and_count_mutations.hpp
fwdpy11/src/evolve_population/init.cc
fwdpy11/src/evolve_population/no_stopping.cc
fwdpy11/src/evolve_population/remove_extinct_genomes.cc
fwdpy11/src/evolve_population/remove_extinct_genomes.hpp
fwdpy11/src/evolve_population/remove_extinct_mutations.cc
fwdpy11/src/evolve_population/remove_extinct_mutations.hpp
fwdpy11/src/evolve_population/runtime_checks.cc
fwdpy11/src/evolve_population/runtime_checks.hpp
fwdpy11/src/evolve_population/track_ancestral_counts.cc
fwdpy11/src/evolve_population/track_ancestral_counts.hpp
fwdpy11/src/evolve_population/track_mutation_counts.cc
fwdpy11/src/evolve_population/track_mutation_counts.hpp
fwdpy11/src/evolve_population/util.cc
fwdpy11/src/evolve_population/util.hpp
fwdpy11/src/functions/_add_mutation.cc
fwdpy11/src/functions/add_mutation.cc
fwdpy11/src/functions/add_mutation.hpp
fwdpy11/src/functions/init.cc
fwdpy11/src/fwdpp_types/DataMatrix.cc
fwdpy11/src/fwdpp_types/Edge.cc
fwdpy11/src/fwdpp_types/EdgeTable.cc
fwdpy11/src/fwdpp_types/HaploidGenome.cc
fwdpy11/src/fwdpp_types/MutationBase.cc
fwdpy11/src/fwdpp_types/MutationRecord.cc
fwdpy11/src/fwdpp_types/MutationTable.cc
fwdpy11/src/fwdpp_types/NULL_NODE.cc
fwdpy11/src/fwdpp_types/Node.cc
fwdpy11/src/fwdpp_types/NodeTable.cc
fwdpy11/src/fwdpp_types/Site.cc
fwdpy11/src/fwdpp_types/SiteTable.cc
fwdpy11/src/fwdpp_types/TableCollection.cc
fwdpy11/src/fwdpp_types/init.cc
fwdpy11/src/fwdpy11_types/DiploidGenotype.cc
fwdpy11/src/fwdpy11_types/DiploidMetadata.cc
fwdpy11/src/fwdpy11_types/DiploidPopulation.cc
fwdpy11/src/fwdpy11_types/DiploidVector.cc
fwdpy11/src/fwdpy11_types/GeneticMapUnit.cc
fwdpy11/src/fwdpy11_types/HaploidGenomeVector.cc
fwdpy11/src/fwdpy11_types/Mutation.cc
fwdpy11/src/fwdpy11_types/MutationVector.cc
fwdpy11/src/fwdpy11_types/PopulationBase.cc
fwdpy11/src/fwdpy11_types/RecordNothing.cc
fwdpy11/src/fwdpy11_types/get_individuals.hpp
fwdpy11/src/fwdpy11_types/init.cc
fwdpy11/src/fwdpy11_types/rng.cc
fwdpy11/src/fwdpy11_types/ts_from_tskit.cc
fwdpy11/src/fwdpy11_types/tsrecorders.cc
fwdpy11/src/genetic_value_noise/GaussianNoise.cc
fwdpy11/src/genetic_value_noise/GeneticValueNoise.cc
fwdpy11/src/genetic_value_noise/NoNoise.cc
fwdpy11/src/genetic_value_noise/init.cc
fwdpy11/src/genetic_value_to_fitness/GSSmo.cc
fwdpy11/src/genetic_value_to_fitness/GeneticValueIsFitness.cc
fwdpy11/src/genetic_value_to_fitness/GeneticValueIsTrait.cc
fwdpy11/src/genetic_value_to_fitness/GeneticValueToFitnessMap.cc
fwdpy11/src/genetic_value_to_fitness/MultivariateGSSmo.cc
fwdpy11/src/genetic_value_to_fitness/Optimum.cc
fwdpy11/src/genetic_value_to_fitness/PleiotropicOptima.cc
fwdpy11/src/genetic_value_to_fitness/init.cc
fwdpy11/src/genetic_values/Additive.cc
fwdpy11/src/genetic_values/DiploidGeneticValue.cc
fwdpy11/src/genetic_values/DiploidMultivariateEffectsStrictAdditive.cc
fwdpy11/src/genetic_values/GBR.cc
fwdpy11/src/genetic_values/Multiplicative.cc
fwdpy11/src/genetic_values/PyDiploidGeneticValue.cc
fwdpy11/src/genetic_values/dgvalue_pointer_vector.cc
fwdpy11/src/genetic_values/init.cc
fwdpy11/src/gsl/gsl_random.cc
fwdpy11/src/gsl/init.cc
fwdpy11/src/mutation_dominance/MutationDominance.cc
fwdpy11/src/mutation_dominance/init.cc
fwdpy11/src/regions/ConstantS.cc
fwdpy11/src/regions/DiscreteDESD.cc
fwdpy11/src/regions/ExpS.cc
fwdpy11/src/regions/GammaS.cc
fwdpy11/src/regions/GaussianS.cc
fwdpy11/src/regions/LogNormalS.cc
fwdpy11/src/regions/MultivariateGaussianEffects.cc
fwdpy11/src/regions/MutationRegions.cc
fwdpy11/src/regions/RecombinationRegions.cc
fwdpy11/src/regions/Region.cc
fwdpy11/src/regions/Sregion.cc
fwdpy11/src/regions/UniformS.cc
fwdpy11/src/regions/init.cc
fwdpy11/src/regions/mvDES.cc
fwdpy11/src/ts/DataMatrixIterator.cc
fwdpy11/src/ts/TreeIterator.cc
fwdpy11/src/ts/VariantIterator.cc
fwdpy11/src/ts/count_mutations.cc
fwdpy11/src/ts/data_matrix_from_tables.cc
fwdpy11/src/ts/infinite_sites.cc
fwdpy11/src/ts/init.cc
fwdpy11/src/ts/node_traversal.cc
fwdpy11/src/ts/node_traversal.hpp
fwdpy11/src/ts/simplify.cc
fwdpy11/tskit_tools/__init__.py
fwdpy11/tskit_tools/_dump_tables_to_tskit.py
fwdpy11/tskit_tools/_flags.py
fwdpy11/tskit_tools/metadata.py
fwdpy11/tskit_tools/metadata_schema.py
fwdpy11/tskit_tools/trees.py
requirements/conda_minimal_deps.txt
requirements/conda_minimal_deps_Linux.txt
requirements/conda_minimal_deps_macOS.txt
tests/CMakeLists.txt
tests/EsizeZero.cc
tests/call_Sregion.cc
tests/common_mako.py
tests/conftest.py
tests/custom_additive.cc
tests/custom_stateless_genotype.cc
tests/fwdpy11_test_utilities.py
tests/gsl_error.cc
tests/inherit_noise.cc
tests/ll_snowdrift.cc
tests/numpy_array_interface.cc
tests/pickling_composed_classes.cc
tests/pickling_cpp.cc
tests/poptools.cc
tests/pyadditive.py
tests/pyadditivegss.py
tests/pygss.py
tests/pynoise.py
tests/quick_pops.py
tests/snowdrift.py
tests/sregion_cdf.cc
tests/testMultivariateGSSmo.cc
tests/test_DemographyDebugger.py
tests/test_DiploidPopulation.py
tests/test_GSLerror.py
tests/test_ModelParams.py
tests/test_Mutation.py
tests/test_SampleRecorder.py
tests/test_Sregion_from_cdf.py
tests/test_TableCollection_fs.py
tests/test_add_mutation.py
tests/test_ancient_samples_with_neutral_mutations.py
tests/test_binary_format_compatibility.py
tests/test_class_decorators.py
tests/test_custom_exceptions.py
tests/test_custom_stateless_fitness.py
tests/test_demes2fwdpy11.py
tests/test_demog.yaml
tests/test_demographic_event_timings.py
tests/test_demographic_event_verbs.py
tests/test_demographic_models.py
tests/test_dgvalue_pointer_vector.py
tests/test_discrete_demography.py
tests/test_discrete_demography_with_tree_sequences.py
tests/test_fwdpp_types.py
tests/test_genetic_map_unit.py
tests/test_genetic_value_noise.py
tests/test_genetic_value_to_fitness.py
tests/test_genetic_values.py
tests/test_inherited_noise.py
tests/test_metadata_encoding_with_tskit.py
tests/test_metadata_roundtrips_via_simulation.py
tests/test_multivariate_effects.py
tests/test_mutation_dominance.py
tests/test_mutation_labels.py
tests/test_numpy.py
tests/test_numpy_array_interface.py
tests/test_pickling.py
tests/test_pickling_composed_classes.py
tests/test_python_genetic_values.py
tests/test_record_genetic_value_matrix.py
tests/test_regions.py
tests/test_selective_sweeps.py
tests/test_stateful_fitness.py
tests/test_stopping_criterion.py
tests/test_tree_sequences.py
tests/test_tree_sequences_different_des_in_different_demes.py
tests/test_tree_sequences_esize_zero_selected_variants.py
tests/test_tree_sequences_with_neutral_mutations.py
tests/test_ts_from_msprime.py
tests/test_tskit_export.py
tests/test_tskit_metadata.py
tests/test_wrapped_tskit_tree_sequence.py
tests/v045.bin