.gitignore
.hidden
.readthedocs.yml
LICENSE.txt
LongDescription.md
MANIFEST.in
README.md
_config.yml
build.cmd
build_package.md
pyproject.toml
release howto.md
setup.py
.github/workflows/build_wheel.yml
.github/workflows/tests.yml
conda.recipe/bld.bat
conda.recipe/build.sh
conda.recipe/meta.yaml
docs/Makefile
docs/environment.yml
docs/how_to_configure_readthedocs.txt
docs/make.bat
docs/rtd_requirements.txt
docs/source/HDF5_format.rst
docs/source/HDF5_smFRET.rst
docs/source/TODO.txt
docs/source/absolute_beginner.rst
docs/source/background.rst
docs/source/burst_selection.rst
docs/source/burstsearch.rst
docs/source/conf.py
docs/source/cython.rst
docs/source/data_class.rst
docs/source/dependencies.rst
docs/source/exp_fitting.rst
docs/source/files_description.rst
docs/source/fit.rst
docs/source/fret_fit.rst
docs/source/fretmath.rst
docs/source/gaussian_fitting.rst
docs/source/getting_started.rst
docs/source/index.rst
docs/source/installation.rst
docs/source/loader.rst
docs/source/mfit.rst
docs/source/notebook_workflow.rst
docs/source/ph_sel.rst
docs/source/phrates.rst
docs/source/plots.rst
docs/source/plugins.rst
docs/source/readthedocs.py
docs/source/reference_manual.rst
docs/source/releasenotes.rst
docs/source/_static/favicon.png
docs/source/_static/logo.png
docs/source/_static/style.css
docs/source/downloads/frbcmplt.yml
docs/source/downloads/frbmin.yml
docs/source/images/2cde_joint.png
docs/source/images/BVA_joint.png
docs/source/images/alex_jointplot_fit.png
docs/source/images/fret_hist_fit.png
docs/source/images/hist_bg_fit.png
docs/source/images/timetrace_bursts.png
examples/matplotlib_figure_mod_toolbar.py
examples/matplotlib_fonts.py
examples/matplotlib_gui_select.py
examples/mpl_gui_selection.py
examples/qt4_figure.py
examples/timetrace_scroll_demo.py
examples/timetrace_scroll_demo2.py
examples/timetrace_scroll_demo3.py
examples/timetrace_scroll_pygraphqt.py
fretbursts/__init__.py
fretbursts/_version.py
fretbursts/background.py
fretbursts/bg_cache.py
fretbursts/burst_plot.py
fretbursts/burst_plot_attic.py
fretbursts/burstlib.py
fretbursts/burstlib_ext.py
fretbursts/exptools.py
fretbursts/fret_fit.py
fretbursts/fretmath.py
fretbursts/gui_selection.py
fretbursts/hdf5.py
fretbursts/legacy_mode.py
fretbursts/loader.py
fretbursts/loader_legacy.py
fretbursts/mfit.py
fretbursts/ph_sel.py
fretbursts/poisson_threshold.py
fretbursts/scroll_gui.py
fretbursts/select_bursts.py
fretbursts/style.py
fretbursts.egg-info/PKG-INFO
fretbursts.egg-info/SOURCES.txt
fretbursts.egg-info/dependency_links.txt
fretbursts.egg-info/requires.txt
fretbursts.egg-info/top_level.txt
fretbursts/dataload/__init__.py
fretbursts/dataload/manta_reader.py
fretbursts/dataload/multi_ch_reader.py
fretbursts/dataload/pytables_array_list.py
fretbursts/dataload/sm file structure.txt
fretbursts/dataload/spcreader.py
fretbursts/fit/__init__.py
fretbursts/fit/compare_gaussian_fit.py
fretbursts/fit/compare_gaussian_fit2.py
fretbursts/fit/exp_fitting.py
fretbursts/fit/exp_gauss_fitting.py
fretbursts/fit/fitting.py
fretbursts/fit/gaussian_fitting.py
fretbursts/fit/weighted_kde.py
fretbursts/phtools/README.txt
fretbursts/phtools/__init__.py
fretbursts/phtools/burstsearch.py
fretbursts/phtools/burstsearch_c.c
fretbursts/phtools/burstsearch_c.pyx
fretbursts/phtools/phrates.py
fretbursts/phtools/phrates_cy.c
fretbursts/phtools/phrates_cy.pyx
fretbursts/phtools/phrates_numba.py
fretbursts/utils/__init__.py
fretbursts/utils/gui.py
fretbursts/utils/misc.py
notebooks/1. First Steps - Start here if new to Jupyter Notebooks.ipynb
notebooks/Example - 2CDE Method.ipynb
notebooks/Example - Background estimation.ipynb
notebooks/Example - Burst Variance Analysis.ipynb
notebooks/Example - Customize the us-ALEX histogram.ipynb
notebooks/Example - Exporting Burst Data Including Timestamps.ipynb
notebooks/Example - FRET histogram fitting.ipynb
notebooks/Example - Plotting timetraces with bursts.ipynb
notebooks/Example - Selecting FRET populations.ipynb
notebooks/Example - Working with timestamps and bursts.ipynb
notebooks/Example- Combining Technical Repeats.ipynb
notebooks/FRETBursts - 8-spot smFRET burst analysis.ipynb
notebooks/FRETBursts - ns-ALEX example.ipynb
notebooks/FRETBursts - us-ALEX smFRET burst analysis.ipynb
notebooks/nbrun.py
notebooks/dev/exclude-py27.txt
notebooks/dev/docs/Execute notebooks.ipynb
notebooks/dev/docs/FRETBursts - Build docs.ipynb
notebooks/dev/tests/FRETBursts - Background save and load test.ipynb
notebooks/dev/tests/FRETBursts - Regression tests.ipynb
notebooks/dev/tests/FRETBursts - Unit tests-debug.ipynb
notebooks/dev/tests/FRETBursts - Unit tests.ipynb
tests/importtest.py
tests/test_Bursts.py
tests/test_burst_plot.py
tests/test_burstlib.py
tests/test_burstlib_ext.py
tests/test_exp_fitting.py
tests/test_ph_sel.py