MANIFEST.in
README.rst
setup.py
frag_pele/__init__.py
frag_pele/constants.py
frag_pele/log_configure.ini
frag_pele/main.py
frag_pele/serie_handler.py
frag_pele.egg-info/PKG-INFO
frag_pele.egg-info/SOURCES.txt
frag_pele.egg-info/dependency_links.txt
frag_pele.egg-info/requires.txt
frag_pele.egg-info/top_level.txt
frag_pele/AdaptivePELE_repo/__init__.py
frag_pele/AdaptivePELE_repo/setup.py
frag_pele/AdaptivePELE_repo/AdaptivePELE/__init__.py
frag_pele/AdaptivePELE_repo/AdaptivePELE/adaptiveSampling.py
frag_pele/AdaptivePELE_repo/AdaptivePELE/automateRoundsAdaptive.py
frag_pele/AdaptivePELE_repo/AdaptivePELE/makeRelease.py
frag_pele/AdaptivePELE_repo/AdaptivePELE/runAllTests.py
frag_pele/AdaptivePELE_repo/AdaptivePELE/analysis/__init__.py
frag_pele/AdaptivePELE_repo/AdaptivePELE/analysis/addRejectedSteps.py
frag_pele/AdaptivePELE_repo/AdaptivePELE/analysis/analyse.py
frag_pele/AdaptivePELE_repo/AdaptivePELE/analysis/analyseClustering.py
frag_pele/AdaptivePELE_repo/AdaptivePELE/analysis/backtrackAdaptiveTrajectory.py
frag_pele/AdaptivePELE_repo/AdaptivePELE/analysis/compareClustering.py
frag_pele/AdaptivePELE_repo/AdaptivePELE/analysis/correctRMSD.py
frag_pele/AdaptivePELE_repo/AdaptivePELE/analysis/findfirstbindingevent.py
frag_pele/AdaptivePELE_repo/AdaptivePELE/analysis/foldersFirstBindingEvent.py
frag_pele/AdaptivePELE_repo/AdaptivePELE/analysis/histCM.py
frag_pele/AdaptivePELE_repo/AdaptivePELE/analysis/makePNGs.py
frag_pele/AdaptivePELE_repo/AdaptivePELE/analysis/networkCM.py
frag_pele/AdaptivePELE_repo/AdaptivePELE/analysis/numberOfClusters.py
frag_pele/AdaptivePELE_repo/AdaptivePELE/analysis/pathwayRMSD.py
frag_pele/AdaptivePELE_repo/AdaptivePELE/analysis/plot3DNetwork.py
frag_pele/AdaptivePELE_repo/AdaptivePELE/analysis/plotAdaptive.py
frag_pele/AdaptivePELE_repo/AdaptivePELE/analysis/plotRMSF.py
frag_pele/AdaptivePELE_repo/AdaptivePELE/analysis/plotSpawningClusters.py
frag_pele/AdaptivePELE_repo/AdaptivePELE/analysis/splitTrajectory.py
frag_pele/AdaptivePELE_repo/AdaptivePELE/analysis/writeClusteringStructures.py
frag_pele/AdaptivePELE_repo/AdaptivePELE/analysis/writeNetworkFiles.py
frag_pele/AdaptivePELE_repo/AdaptivePELE/analysis/writeTrajToSnapshot.py
frag_pele/AdaptivePELE_repo/AdaptivePELE/atomset/RMSDCalculator.cpython-37m-x86_64-linux-gnu.so
frag_pele/AdaptivePELE_repo/AdaptivePELE/atomset/RMSDCalculator.pxd
frag_pele/AdaptivePELE_repo/AdaptivePELE/atomset/RMSDCalculator.pyx
frag_pele/AdaptivePELE_repo/AdaptivePELE/atomset/SymmetryContactMapEvaluator.cpython-37m-x86_64-linux-gnu.so
frag_pele/AdaptivePELE_repo/AdaptivePELE/atomset/SymmetryContactMapEvaluator.pxd
frag_pele/AdaptivePELE_repo/AdaptivePELE/atomset/SymmetryContactMapEvaluator.pyx
frag_pele/AdaptivePELE_repo/AdaptivePELE/atomset/__init__.py
frag_pele/AdaptivePELE_repo/AdaptivePELE/atomset/atomset.cpython-37m-x86_64-linux-gnu.so
frag_pele/AdaptivePELE_repo/AdaptivePELE/atomset/atomset.pxd
frag_pele/AdaptivePELE_repo/AdaptivePELE/atomset/atomset.pyx
frag_pele/AdaptivePELE_repo/AdaptivePELE/clustering/__init__.py
frag_pele/AdaptivePELE_repo/AdaptivePELE/clustering/clustering.py
frag_pele/AdaptivePELE_repo/AdaptivePELE/clustering/clusteringTypes.py
frag_pele/AdaptivePELE_repo/AdaptivePELE/clustering/thresholdcalculator.py
frag_pele/AdaptivePELE_repo/AdaptivePELE/clustering/thresholdcalculatortypes.py
frag_pele/AdaptivePELE_repo/AdaptivePELE/constants/__init__.py
frag_pele/AdaptivePELE_repo/AdaptivePELE/constants/blockNames.py
frag_pele/AdaptivePELE_repo/AdaptivePELE/constants/constants.py
frag_pele/AdaptivePELE_repo/AdaptivePELE/constants/symmetries.py
frag_pele/AdaptivePELE_repo/AdaptivePELE/freeEnergies/__init__.py
frag_pele/AdaptivePELE_repo/AdaptivePELE/freeEnergies/calculateAdaptiveDGiterations.py
frag_pele/AdaptivePELE_repo/AdaptivePELE/freeEnergies/calculateDGiterations.py
frag_pele/AdaptivePELE_repo/AdaptivePELE/freeEnergies/checkDetailedBalance.py
frag_pele/AdaptivePELE_repo/AdaptivePELE/freeEnergies/cluster.py
frag_pele/AdaptivePELE_repo/AdaptivePELE/freeEnergies/computeDGGrid.py
frag_pele/AdaptivePELE_repo/AdaptivePELE/freeEnergies/computeDeltaG.py
frag_pele/AdaptivePELE_repo/AdaptivePELE/freeEnergies/estimate.py
frag_pele/AdaptivePELE_repo/AdaptivePELE/freeEnergies/estimateDG.py
frag_pele/AdaptivePELE_repo/AdaptivePELE/freeEnergies/estimateDGAdaptive.py
frag_pele/AdaptivePELE_repo/AdaptivePELE/freeEnergies/extendTrajectories.py
frag_pele/AdaptivePELE_repo/AdaptivePELE/freeEnergies/extractCoords.py
frag_pele/AdaptivePELE_repo/AdaptivePELE/freeEnergies/getRepresentativeStructures.py
frag_pele/AdaptivePELE_repo/AdaptivePELE/freeEnergies/ownBuildMSM.py
frag_pele/AdaptivePELE_repo/AdaptivePELE/freeEnergies/prepareMSMFolders.py
frag_pele/AdaptivePELE_repo/AdaptivePELE/freeEnergies/runMarkovChainModel.py
frag_pele/AdaptivePELE_repo/AdaptivePELE/freeEnergies/utils.pyx
frag_pele/AdaptivePELE_repo/AdaptivePELE/freeEnergies/writeExtractedCoordsAsPDB.py
frag_pele/AdaptivePELE_repo/AdaptivePELE/simulation/__init__.py
frag_pele/AdaptivePELE_repo/AdaptivePELE/simulation/simulationTypes.py
frag_pele/AdaptivePELE_repo/AdaptivePELE/simulation/simulationrunner.py
frag_pele/AdaptivePELE_repo/AdaptivePELE/spawning/__init__.py
frag_pele/AdaptivePELE_repo/AdaptivePELE/spawning/densitycalculator.py
frag_pele/AdaptivePELE_repo/AdaptivePELE/spawning/densitycalculatortypes.py
frag_pele/AdaptivePELE_repo/AdaptivePELE/spawning/spawning.py
frag_pele/AdaptivePELE_repo/AdaptivePELE/spawning/spawningTypes.py
frag_pele/AdaptivePELE_repo/AdaptivePELE/tests/__init__.py
frag_pele/AdaptivePELE_repo/AdaptivePELE/tests/testAdaptiveSampling.py
frag_pele/AdaptivePELE_repo/AdaptivePELE/tests/testAtomset.py
frag_pele/AdaptivePELE_repo/AdaptivePELE/tests/testClustering.py
frag_pele/AdaptivePELE_repo/AdaptivePELE/tests/testDensityCalculator.py
frag_pele/AdaptivePELE_repo/AdaptivePELE/tests/testSpawning.py
frag_pele/AdaptivePELE_repo/AdaptivePELE/tests/testThresholdcalculator.py
frag_pele/AdaptivePELE_repo/AdaptivePELE/utilities/__init__.py
frag_pele/AdaptivePELE_repo/AdaptivePELE/utilities/clusteringUtilities.py
frag_pele/AdaptivePELE_repo/AdaptivePELE/utilities/utilities.py
frag_pele/AdaptivePELE_repo/AdaptivePELE/validator/__init__.py
frag_pele/AdaptivePELE_repo/AdaptivePELE/validator/controlFileValidator.py
frag_pele/AdaptivePELE_repo/AdaptivePELE/validator/validatorBlockNames.py
frag_pele/Analysis/__init__.py
frag_pele/Analysis/analyser.py
frag_pele/Analysis/forcefield_analysis.py
frag_pele/Analysis/get_plots.py
frag_pele/Analysis/interaction_detector.py
frag_pele/Analysis/output_files.py
frag_pele/Analysis/rmsd_computer.py
frag_pele/Analysis/sidecahins_analyser.py
frag_pele/Banner/Detector.py
frag_pele/Banner/__init__.py
frag_pele/Growing/__init__.py
frag_pele/Growing/add_fragment_from_pdbs.py
frag_pele/Growing/bestStructs.py
frag_pele/Growing/simulations_linker.py
frag_pele/Growing/template_fragmenter.py
frag_pele/Growing/template_selector.py
frag_pele/Growing/AddingFragHelpers/__init__.py
frag_pele/Growing/AddingFragHelpers/complex_to_prody.py
frag_pele/Growing/AddingFragHelpers/pdb_joiner.py
frag_pele/Growing/add_fragment/__init__.py
frag_pele/Helpers/__init__.py
frag_pele/Helpers/center_of_mass.py
frag_pele/Helpers/check_constants.py
frag_pele/Helpers/checker.py
frag_pele/Helpers/clusterizer.py
frag_pele/Helpers/constraints.py
frag_pele/Helpers/correct_fragment_names.py
frag_pele/Helpers/folder_handler.py
frag_pele/Helpers/helpers.py
frag_pele/Helpers/runner.py
frag_pele/Helpers/templatize.py
frag_pele/PlopRotTemp_S_2017/PlopRotTemp.py
frag_pele/PlopRotTemp_S_2017/__init__.py
frag_pele/PlopRotTemp_S_2017/ligand_prep.py
frag_pele/PlopRotTemp_S_2017/main.py
frag_pele/PlopRotTemp_S_2017/param/f14_sgbnp.param
frag_pele/PlopRotTemp_S_2017/param/params.cov
frag_pele/PlopRotTemp_S_2017/param/params.nb
frag_pele/PlopRotTemp_S_2017/param/sgbnp.param
frag_pele/PlopRotTemp_S_2017/param/similarity.param
frag_pele/PlopRotTemp_S_2017/template/__init__.py
frag_pele/PlopRotTemp_S_2017/template/chargeHandler.py
frag_pele/PlopRotTemp_S_2017/template/templateBuilder.py
frag_pele/PlopRotTemp_S_2017/template/tmp_helpers.py
frag_pele/Templates/constants.py
frag_pele/Templates/control_template.conf