from rnavigate.plots.plots import Plot
from rnavigate.plots.alignment import Alignment
from rnavigate.plots.profile import Profile
from rnavigate.plots.ss import SS

from rnavigate.plots.functions import (
    get_contrasting_colors,
    adjust_spines,
    clip_spines,
    get_nt_ticks,
    set_nt_ticks,
    box_xtick_labels,
    plot_interactions_arcs,
    plot_profile_bars,
    plot_profile_skyline,
    plot_sequence_alignment,
    plot_annotation_track,
    plot_domain_track,
    plot_sequence_track,
    plot_annotation_ss,
    plot_basepairs_ss,
    plot_interactions_ss,
    plot_nucleotides_ss,
    plot_positions_ss,
    plot_sequence_ss,
    plot_structure_ss,
    plot_annotation_circle,
    plot_interactions_circle,
)

__all__ = [
    "Alignment",
    "AP",
    "Circle",
    "Profile",
    "QC",
    "SS",
    "get_contrasting_colors",
    "adjust_spines",
    "clip_spines",
    "get_nt_ticks",
    "set_nt_ticks",
    "box_xtick_labels",
    "plot_interactions_arcs",
    "plot_profile_bars",
    "plot_profile_skyline",
    "plot_sequence_alignment",
    "plot_annotation_track",
    "plot_domain_track",
    "plot_sequence_track",
    "plot_annotation_ss",
    "plot_basepairs_ss",
    "plot_interactions_ss",
    "plot_nucleotides_ss",
    "plot_positions_ss",
    "plot_sequence_ss",
    "plot_structure_ss",
    "plot_annotation_circle",
    "plot_interactions_circle",
]
