aiofiles==25.1.0
argcomplete==3.6.3
argh==0.31.3
biopython==1.86
gffutils==0.13
numpy==2.3.4
packaging==25.0
pillow==12.0.0
psutil==7.1.3
pyBigWig==0.3.24
pyfaidx==0.9.0.3
pysam==0.23.3
simplejson==3.20.2
bx-python

[dev]
pytest
pytest-asyncio
ruff
