At line start argument must start by '>'
>input_folder='path/to/input/directory/'
>output_folder='path/to/output/directory/'

# Parallelization
>parallelization=False
>proc=5

# # Ontology_parse

>parse_ontology1=True
>parse_ontology2=False

# # # Ontology 1 #
>file1='CELDA_import.owl'
>take_synonyms1=True
>filter_by_keywords1='human', 'mouse'
>ontologyName1=None
>synonym_type1='owlNCBITaxon:synonym'
>label_type1='CELDA:commonName xml:lang="en"', 'CELDA:commonName', 'rdfs:label'
>relative_type1='owl:someValuesFrom'
>file_clean_ontology1='file_clean_CELDA.txt'


# # # Ontology 2 #
>file2='LifeMap_parsed.ods'
>take_synonyms2=True
>filter_by_keywords2='human', 'mouse'
>ontologyName2='LifeMap'
>synonym_type2='owlNCBITaxon:synonym'
>label_type2='rdfs:label')
>relative_type2='owl:someValuesFrom'
>file_clean_ontology2=''


# # ontology_fusion
>del_old_trials_files=False
>onto1_fuseclasses=True
>onto2_fuseclasses=True
>onto1_restriction=False
>onto2_restriction=True
>onto1_list_clear='cell', 'cells'
>onto2_list_clear='cell', 'cells'
>semantical=True
>text_process=True
>split_from1=
>split_since1=None
>split_from2=None
>split_since2=None
>windowsize=4
>namethreshold=0.85
>localnamethreshold=0.7
>structure_threshold=0.0
>structure_method='cosine'
>automatic=True
