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freesurfer/bin/dmri_neighboringRegions
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freesurfer/bin/dmri_projectEndPoints
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freesurfer/bin/dmri_saveHistograms
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freesurfer/bin/dmri_tensoreig
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freesurfer/bin/flirt.newdefault.20080811.sch
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freesurfer/bin/fslswapdim.fsl
freesurfer/bin/fspalm
freesurfer/bin/fsPrintHelp
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freesurfer/bin/fs_run_from_mcr
freesurfer/bin/fs_spmreg.glnxa64
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freesurfer/bin/mris_niters2fwhm
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freesurfer/bin/mri-sph2surf
freesurfer/bin/mris_pmake
freesurfer/bin/mris_preproc
freesurfer/bin/mris_profileClustering
freesurfer/bin/mrisp_write
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freesurfer/bin/mris_register_label_map
freesurfer/bin/mris_register_to_label
freesurfer/bin/mris_register_to_volume
freesurfer/bin/mris_remove_negative_vertices
freesurfer/bin/mris_remove_variance
freesurfer/bin/mris_resample
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freesurfer/bin/mris_shrinkwrap
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freesurfer/bin/mris_smooth_intracortical
freesurfer/bin/mris_surf2vtk
freesurfer/bin/mris_surface_change
freesurfer/bin/mris_surface_to_vol_distances
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freesurfer/bin/mris_talairach
freesurfer/bin/mris_thickness_comparison
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freesurfer/bin/mris_transmantle_dysplasia_paths
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freesurfer/bin/mris_twoclass
freesurfer/bin/mri_surfacemask
freesurfer/bin/mris_volmask_novtk
freesurfer/bin/mris_volmask_vtk
freesurfer/bin/mris_volsmooth
freesurfer/bin/mris_volume
freesurfer/bin/mris_warp
freesurfer/bin/mris_wm_volume
freesurfer/bin/mris_w_to_curv
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freesurfer/bin/mri_synthstrip
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freesurfer/bin/mri_topologycorrection
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freesurfer/bin/mri_vol2label
freesurfer/bin/mri_vol2roi
freesurfer/bin/mri_volcluster
freesurfer/bin/mri_volsynth
freesurfer/bin/mri_warp_convert
freesurfer/bin/mri_wbc
freesurfer/bin/mri_wmfilter
freesurfer/bin/mri_xcorr
freesurfer/bin/mri_xvolavg
freesurfer/bin/mri_z2p
freesurfer/bin/ms_refine_subject
freesurfer/bin/nmovie_qt
freesurfer/bin/oct_register_mosaic
freesurfer/bin/oct_rf_train
freesurfer/bin/oct_train
freesurfer/bin/optseq2
freesurfer/bin/orientLAS
freesurfer/bin/parc_atlas_jackknife_test
freesurfer/bin/plot_structure_stats.tcl
freesurfer/bin/polyorder
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freesurfer/bin/print_unique_labels.csh
freesurfer/bin/progressbar.tcl
freesurfer/bin/qatools.py
freesurfer/bin/qdec
freesurfer/bin/qdec_glmfit
freesurfer/bin/qt.conf
freesurfer/bin/quantifyBrainstemStructures.sh
freesurfer/bin/quantifyHAsubregions.sh
freesurfer/bin/quantifyThalamicNuclei.sh
freesurfer/bin/rbbr
freesurfer/bin/rbftest
freesurfer/bin/rcbf-prep
freesurfer/bin/rebuild_gca_atlas.csh
freesurfer/bin/recon-all-exvivo
freesurfer/bin/recon-all.makefile
freesurfer/bin/regdat2xfm
freesurfer/bin/reg-feat2anat
freesurfer/bin/register_child
freesurfer/bin/register.csh
freesurfer/bin/register_elderly_subject
freesurfer/bin/register_subject
freesurfer/bin/register_subject_flash
freesurfer/bin/register_subject_mixed
freesurfer/bin/reg-mni305.2mm
freesurfer/bin/reinflate_subject
freesurfer/bin/reinflate_subject-lh
freesurfer/bin/reinflate_subject-rh
freesurfer/bin/remove_talairach
freesurfer/bin/renormalize_subject
freesurfer/bin/renormalize_subject_keep_editting
freesurfer/bin/renormalize_T1_subject
freesurfer/bin/repair_siemens_file
freesurfer/bin/reregister_subject_mixed
freesurfer/bin/rtview
freesurfer/bin/run_mris_preproc
freesurfer/bin/run-qdec-glm
freesurfer/bin/run_samseg_long
freesurfer/bin/run_SegmentSubfieldsT1Longitudinal.sh
freesurfer/bin/run_SegmentSubject.sh
freesurfer/bin/run_segmentSubjectT1_autoEstimateAlveusML.sh
freesurfer/bin/run_segmentSubjectT1T2_autoEstimateAlveusML.sh
freesurfer/bin/run_segmentSubjectT2_autoEstimateAlveusML.sh
freesurfer/bin/run_SegmentThalamicNuclei.sh
freesurfer/bin/samseg
freesurfer/bin/samseg2recon
freesurfer/bin/samseg-long
freesurfer/bin/sbtiv
freesurfer/bin/seg2filled
freesurfer/bin/segmentBS.sh
freesurfer/bin/segmentHA_T1_long.sh
freesurfer/bin/segmentHA_T1.sh
freesurfer/bin/segmentHA_T2.sh
freesurfer/bin/segment_monkey
freesurfer/bin/SegmentSubfieldsT1Longitudinal
freesurfer/bin/segment_subject
freesurfer/bin/segmentSubject
freesurfer/bin/segment_subject_notal
freesurfer/bin/segment_subject_notal2
freesurfer/bin/segment_subject_old_skull_strip
freesurfer/bin/segment_subject_sc
freesurfer/bin/segmentSubjectT1_autoEstimateAlveusML
freesurfer/bin/segmentSubjectT1T2_autoEstimateAlveusML
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freesurfer/bin/segment_subject_talmgh
freesurfer/bin/SegmentThalamicNuclei
freesurfer/bin/segmentThalamicNuclei.sh
freesurfer/bin/segpons
freesurfer/bin/setlabelstat
freesurfer/bin/sfa2fieldsign
freesurfer/bin/show_tal
freesurfer/bin/skip_long_make_checks
freesurfer/bin/slicedelay
freesurfer/bin/slicetimer.fsl
freesurfer/bin/sphere_subject
freesurfer/bin/sphere_subject-lh
freesurfer/bin/sphere_subject-rh
freesurfer/bin/spherical_st
freesurfer/bin/Spline3_test
freesurfer/bin/spmmat2register
freesurfer/bin/spmregister
freesurfer/bin/spm_t_to_b
freesurfer/bin/sratio
freesurfer/bin/stat_normalize
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freesurfer/bin/stem2fname
freesurfer/bin/stim_polar
freesurfer/bin/streamlineFilter
freesurfer/bin/surf2vol
freesurfer/bin/surfreg
freesurfer/bin/swi_preprocess
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freesurfer/bin/t4img_4dfp
freesurfer/bin/t4imgs_4dfp
freesurfer/bin/talairach2
freesurfer/bin/talairach_mgh
freesurfer/bin/tal_compare
freesurfer/bin/tal_QC_AZS
freesurfer/bin/talsegprob
freesurfer/bin/template
freesurfer/bin/testOrientationPlanesFromParcellation
freesurfer/bin/test_recon-all.csh
freesurfer/bin/test_tutorials.sh
freesurfer/bin/thickdiffmap
freesurfer/bin/tkmedit
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freesurfer/bin/tkregister2
freesurfer/bin/tkregisterfv
freesurfer/bin/tksurfer
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freesurfer/bin/trac-paths
freesurfer/bin/trac-preproc
freesurfer/bin/tractstats2table
freesurfer/bin/train-gcs-atlas
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freesurfer/bin/trk_tools
freesurfer/bin/unpack_ima1.tcl
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freesurfer/bin/unpack_ima.tcl
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freesurfer/bin/vol2segavg
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freesurfer/bin/vol2symsurf
freesurfer/bin/vsm-smooth
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freesurfer/bin/wmedits2surf
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freesurfer/bin/xhemi-tal
freesurfer/bin/xsanatreg
freesurfer/bin/zero_lt_4dfp
freesurfer/DefectLUT.txt
freesurfer/diffusion
freesurfer/docs/xml
freesurfer/FreeSurferEnv.csh
freesurfer/FreeSurferEnv.sh
freesurfer/fsfast
freesurfer/lib/bem/ic0.tri
freesurfer/lib/bem/ic1.tri
freesurfer/lib/bem/ic2.tri
freesurfer/lib/bem/ic3.tri
freesurfer/lib/bem/ic6.tri
freesurfer/lib/bem/inner_skull.dat
freesurfer/lib/bem/outer_skin.dat
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freesurfer/lib/images
freesurfer/lib/qt
freesurfer/lib/resource
freesurfer/lib/tcl
freesurfer/lib/tktools
freesurfer/lib/vtk
freesurfer/matlab
freesurfer/mni-1.4
freesurfer/mni/bin/correct_field
freesurfer/mni/bin/crispify
freesurfer/mni/bin/dcm2mnc
freesurfer/mni/bin/Display
freesurfer/mni/bin/ecattominc
freesurfer/mni/bin/evaluate_field
freesurfer/mni/bin/extracttag
freesurfer/mni/bin/field2imp
freesurfer/mni/bin/imp2field
freesurfer/mni/bin/invert_raw_image
freesurfer/mni/bin/make_model
freesurfer/mni/bin/make_phantom
freesurfer/mni/bin/make_template
freesurfer/mni/bin/mincaverage
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freesurfer/mni/bin/minchistory
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freesurfer/mni/bin/mincmakescalar
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freesurfer/mni/bin/mincmath
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freesurfer/mni/bin/mincstats
freesurfer/mni/bin/minctoecat
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freesurfer/mni/bin/mincwindow
freesurfer/mni/bin/mnc2nii
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freesurfer/mni/bin/ncdump
freesurfer/mni/bin/ncgen
freesurfer/mni/bin/nii2mnc
freesurfer/mni/bin/nu_estimate
freesurfer/mni/bin/nu_estimate_np_and_em~
freesurfer/mni/bin/nu_evaluate
freesurfer/mni/bin/param2xfm
freesurfer/mni/bin/rand_param
freesurfer/mni/bin/rawtominc
freesurfer/mni/bin/register
freesurfer/mni/bin/resample_labels
freesurfer/mni/bin/sharpen_hist
freesurfer/mni/bin/sharpen_volume
freesurfer/mni/bin/spline_smooth
freesurfer/mni/bin/transformtags
freesurfer/mni/bin/upet2mnc
freesurfer/mni/bin/volume_hist
freesurfer/mni/bin/volume_stats
freesurfer/mni/bin/voxeltoworld
freesurfer/mni/bin/worldtovoxel
freesurfer/mni/bin/xcorr_vol
freesurfer/mni/bin/xfm2param
freesurfer/mni/bin/xfmconcat
freesurfer/mni/bin/xfminvert
freesurfer/mni/bin/xfmtool
freesurfer/mni/bin/zscore_vol
freesurfer/mni/data
freesurfer/mni/include
freesurfer/mni/mni.srcbuild.June2015.tgz
freesurfer/mni/share/man
freesurfer/mni/share/N3
freesurfer/models
freesurfer/python/lib/python3.8/test
freesurfer/python/lib/python3.8/site-packages/caffe2
freesurfer/python/lib/python3.8/site-packages/sklearn
freesurfer/python/lib/python3.8/site-packages/tensorflow
freesurfer/python/lib/python3.8/site-packages/torch
freesurfer/python/lib/python3.8/site-packages/**/tests
freesurfer/python/**/__pycache__
freesurfer/python/share
freesurfer/SegmentNoLUT.txt
freesurfer/sessions
freesurfer/SetUpFreeSurfer.csh
freesurfer/SetUpFreeSurfer.sh
freesurfer/Simple_surface_labels2009.txt
freesurfer/sources.sh
freesurfer/subjects/bert
freesurfer/subjects/cvs_avg35
freesurfer/subjects/cvs_avg35_inMNI152
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freesurfer/subjects/fsaverage_sym
freesurfer/subjects/lh.EC_average
freesurfer/subjects/README
freesurfer/subjects/rh.EC_average
freesurfer/subjects/sample-001.mgz
freesurfer/subjects/sample-002.mgz
freesurfer/subjects/V1_average
freesurfer/tkmeditParcColorsCMA
freesurfer/tktools
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