Metadata-Version: 2.1
Name: fluxpyt
Version: 0.1.5
Summary: A stationary 13C-MFA tool.
Home-page: https://sourceforge.net/projects/fluxpyt/
Author: Desai Trunil Shamrao
Author-email: trunild@gmail.com
License: new-bsd
Description: fluxpyt
        ========
        
        This package is developed to perform stationary 13C metabolic flux analysis 
        calculations for estimation of intracellular flux distribution.
        FluxPyt is written in python3. The anaconda package list is provided in 
        the requirements.txt file.
        
        The package was developed as a part of PhD work of Desai Trunil Shamrao at:
        
        Systems Biology for Biofuels Group
        Group Leader, Dr. Shireesh Srivastava
        International Centre for Genetic Engineering and Biotechnology (ICGEB),
        Aruna Asaf Ali Marg,
        New Delhi.
        
        
        Acknowledgements
        ================
        The PhD fellowship of Trunil is funded by the Council for Scientific 
        and Industrial Research (CSIR).
        The project is funded by Department of Biotechnology (DBT)
        
        The author specially thanks Ahmad for being there to discuss issues and to 
        help get rid of few bugs.
        
        
        
        Installation ( for Windows):
        ============================
        These directions are written for Windows users who are not familiar with Python programming.
        
        Download and install Anaconda distribution (version 3.4.4.0 was used in this tutorial).
        
        Open an Anaconda command prompt.
        Click on Windows start button.
        Type 'anaconda'. A link to open Anaconda command promt will be shown.
        
        Type following commands to create new environment in Anaconda for running fluxpyt:
        
        	conda create -n fluxpyt_env python=3.6.1 numpy=1.12.1 scipy=0.19.0 sympy=1.0
        
        	activate fluxpyt_env
        
        	conda install -c conda-forge lmfit
        
        	conda install -c sjpfenninger glpk
        
        	conda install csvkit=0.9.1
        
        	conda install matplotlib=2.0.2
        
        	conda install pandas=0.20.1
        
        	conda install spyder
        
        	pip install fluxpyt
        
        
        
        =========
        Changelog
        =========
        Version 0.1.4
        =============
        -Cleared code to largely follow PEP 8 guidelines.
        
        
        Version 0.1.5
        =============
        -Lower bounds and upper bounds of each reaction can be assigned by user. Note: User defined bounds will affect the final solution only if they affect the bounds of free fluxes.
        -Initial values of free flux parameters selected ome by one by performing flux variability for each free flux taking into account the previously selected value for other free fluxes.
        
        Version 0.1.4
        =============
        -Minor changes
        
        Version 0.1.3
        =============
        -Changed installation directions in README.rst
        
        Version 0.1.2
        =============
        -Changed installation directions in README.rst
        
        Version 0.1.1
        ==============
        -Project setup created by Pyscaffold.
        
        -Generated documentation using Sphinx
        
        Version 0.1
        ============
        -Initial release
        
        
        
        
        
        Note
        ====
        
        This project has been set up using PyScaffold 2.5.8. For details and usage
        information on PyScaffold see http://pyscaffold.readthedocs.org/.
        
Platform: any
Classifier: Programming Language :: Python
Description-Content-Type: text/x-rst; charset=UTF-8
