LICENSE
MANIFEST.in
README.md
README.zh.md
environment.yml
pyproject.toml
docs/flowmeta.png
docs/tutorial.html
flowmeta/__init__.py
flowmeta/cli.py
flowmeta/flowmeta_base.py
flowmeta.egg-info/PKG-INFO
flowmeta.egg-info/SOURCES.txt
flowmeta.egg-info/dependency_links.txt
flowmeta.egg-info/entry_points.txt
flowmeta.egg-info/requires.txt
flowmeta.egg-info/top_level.txt
flowmeta/helper/__init__.py
flowmeta/helper/alpha_diversity.py
flowmeta/helper/beta_diversity.py
flowmeta/helper/combine_bracken_outputs.py
flowmeta/helper/combine_bracken_outputs2.py
flowmeta/helper/combine_kreports.py
flowmeta/helper/combine_mpa.py
flowmeta/helper/conta_list.txt
flowmeta/helper/extract_kraken_reads.py
flowmeta/helper/kraken2otu.py
flowmeta/helper/kreport2krona.py
flowmeta/helper/kreport2mpa.py
flowmeta/helper/make_kreport.py
flowmeta/helper/make_ktaxonomy.py
flowmeta/helper/multipleFieldSelection.py
flowmeta/steps/__init__.py
flowmeta/steps/step1_qc.py
flowmeta/steps/step2_remove_host.py
flowmeta/steps/step3_extract_host.py
flowmeta/steps/step4_kraken_bracken.py
flowmeta/steps/step5_remove_host_counts.py
flowmeta/steps/step6_merge_results.py
flowmeta/utils/__init__.py
flowmeta/utils/check_files.py
flowmeta/utils/logger.py