flowcraft/__init__.py,sha256=8donh3tylQzBb3w7G1xFxtglTfLciuWeMS_mbUuW6N8,242
flowcraft/flowcraft.py,sha256=udjcwrOdQyXuuzHqI3h1jUb2E00UPrs057jzTupLXyw,9525
flowcraft/nextflow.config,sha256=aEyFqy7_vJqYJR_EX_QXz1FakNJotSx10pGTkKlxNEg,2931
flowcraft/profiles.config,sha256=CraC4B6KhSzjqbx6yQmzn_TwrC408is4rttCOcvgItg,1988
flowcraft/bin/final_POST.sh,sha256=MVz1MJ6eh5jv0KUGCtLDC_yBUZ5IooKvvQQ9zs0kvKw,365
flowcraft/bin/merge_json.py,sha256=OKjlJRT2sp89Id6WQnwboSP1Iq9jcf00K6tMPS1kWSE,1842
flowcraft/bin/parse_true_coverage.py,sha256=OAqXA2ujyQjdFk_WT6EuklZvqFNAxNMJArsZJ-UaqGU,1230
flowcraft/bin/prepare_reports.py,sha256=9oXk4E4Hd31ubnDMXtNJYk7UxI32-70DcIlyjyLJZxM,1151
flowcraft/bin/renamePE_samtoolsFASTQ.py,sha256=qvfXNVUbRrAEsY9H5BSxjhFD5cpAIYZt3gxU6Hn-F6c,5143
flowcraft/bin/report_POST.sh,sha256=jXyuSl-tyzlLQ_IzhhzrAPUAcSCQfDlXFLddL-6hk8M,1545
flowcraft/bin/set_dotfiles.sh,sha256=7OGRSpsdmC24vo12tQ6MQ43-PYD2gF-NHBAqn-Qt7EE,72
flowcraft/bin/startup_POST.sh,sha256=OYeHm2wcp8m0SgZUIurnYnU5H-gHeXHxrq3R-Y8gdqY,309
flowcraft/generator/__init__.py,sha256=IbhuC_xlX67NipvwI278PA3WTQojpiKQAodNYNA_upE,45
flowcraft/generator/engine.py,sha256=hV_1rcvHEQEUVPyM2_80dGeeoZngo501abjQi8-fFwg,51579
flowcraft/generator/error_handling.py,sha256=-jlFFkDIT0XLlycL0Yzuz9gBSjQC9R_PxKS2p-kNGpo,577
flowcraft/generator/footer_skeleton.py,sha256=K7M2F29PnrBiNCmrV6W-wYzMZ7SegfVsxwg4AOjKSM0,420
flowcraft/generator/header_skeleton.py,sha256=n9uufvSkLjCNnW_IcL9530jLqunERfTVwo1iojtho0M,884
flowcraft/generator/inspect.py,sha256=6SQdP56dElXhh1QLTPNI7oZHIIdl-aQBPcNtjXU0tsA,50462
flowcraft/generator/pipeline_parser.py,sha256=8DLWIsrKXjm4YA0449fBsF1dvbiFH0Yw2VFdxwWN5nY,19857
flowcraft/generator/process.py,sha256=-4yU3i7Ec1EuBTFchuz7jFX1zkRk23kf81x4dRsnAN4,28985
flowcraft/generator/process_details.py,sha256=xc-ufeOGJ7Zy-x_Xk9ETUmJcMoaz_vMuYGSDfpHnROk,4006
flowcraft/generator/recipe.py,sha256=Zh8r_afonTeRPbi5EEZfqu0jj1_bCG3FxJP7sQ3m8P8,20323
flowcraft/generator/components/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
flowcraft/generator/components/annotation.py,sha256=Ua4_DwA0gRsRN8LazdLW6A1DmZUPJmH0da3-r9GS1ow,3426
flowcraft/generator/components/assembly.py,sha256=OuyEemVUchtaNN0uLzU2k1jC_VCUM6vOSXbeeZmxY_c,3872
flowcraft/generator/components/assembly_processing.py,sha256=f4zNtWpbk_oe6bTcoDSBd1M_4UK1Ii4X6pNJD1zoq7A,9804
flowcraft/generator/components/distance_estimation.py,sha256=a6NnL7rQt93RHplenNOdY77t69VIVje4MchFDCImFtI,4244
flowcraft/generator/components/downloads.py,sha256=BdWwuXJccxFOFVl2W1_BRZ57eKJIQWBQgT1EB_b1nHc,1131
flowcraft/generator/components/metagenomics.py,sha256=d_LKls5p3Lk5poeXq_lV-wFiIlz4tyEoArxBjkcUDx8,8409
flowcraft/generator/components/mlst.py,sha256=BKFszjZ4k7zYxDCWGx4tFV3a4SDmj80fj1RQp2zrf7U,6788
flowcraft/generator/components/patlas_mapping.py,sha256=vdi7ipniutXFNVAlOjpn9jqCqDidgttbIL7fcX-F-tY,3493
flowcraft/generator/components/reads_quality_control.py,sha256=0XkmLdfewMfr3jw1T9_Uz8NvagdqaNWf82Cb9lHu7GI,16355
flowcraft/generator/components/typing.py,sha256=ht_Smjzujm2fVcucy8GME3G7cq-aU7tgVsoRe2mtwbE,4297
flowcraft/generator/templates/Helper.groovy,sha256=WpiCJtBth4BZqe52AlnR5ZFffuPIcVpc9GMc2UV18m0,2250
flowcraft/generator/templates/abricate.nf,sha256=2YaXRiOmiSOME45BJFjcsQIAQkbbMPQii6ZXWGSdLDs,1019
flowcraft/generator/templates/assembly_mapping.nf,sha256=G7TJZcF_TKUr8yNB_ypJ6hk7JZIFgnsgNdHBD-whr9I,3164
flowcraft/generator/templates/bowtie_build.nf,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
flowcraft/generator/templates/card_rgi.nf,sha256=EkcdzN_kj0yabihio2jobSr24Ah277Bhacqd4HpPszo,905
flowcraft/generator/templates/check_coverage.nf,sha256=n6gHxMDFJoSW6x5hgS1OamZpGGjN8O04QfwcjiBmMvM,1486
flowcraft/generator/templates/chewbbaca.nf,sha256=ASbmVOvc5xEgMLKErkRRxygxbQE89Mr2l9EBmkaXQ6c,4042
flowcraft/generator/templates/compiler_channels.txt,sha256=4J4Ri5bEXhEETfCvV6dTZBGeTGz2LH9yr32z47j3fhk,362
flowcraft/generator/templates/containers.config,sha256=BwogjdzniUVghoFvzavyZi6wOJTi3MpVUJxyPCWQBp0,33
flowcraft/generator/templates/fastqc.nf,sha256=zwk0VPDY-vJqD3DingfTXHCK7yhGjKh4DDzKohdw_fA,1960
flowcraft/generator/templates/fastqc_trimmomatic.nf,sha256=iB0b0gcqW0394LZAYxRRKH4EjDxvOEJhMVwCHqO1-1A,3563
flowcraft/generator/templates/filter_poly.nf,sha256=H5kaTqFvl5pWiYuaUG94V9B90m_8ADElgt7AbvX5Rg8,776
flowcraft/generator/templates/init.nf,sha256=9dvePtgdFO7mtLRTSctA_N2liEq4EldPiP8B0OjYZEY,245
flowcraft/generator/templates/integrity_coverage.nf,sha256=Qkuv_sPt4fKvcjT8WCz_e9few7BWqQKS1hIJDqhzK0E,2888
flowcraft/generator/templates/kraken.nf,sha256=iQtUgtphsKsEZwPQ3UGAbUYeKq_RGm3qtIdh0PPzOTk,773
flowcraft/generator/templates/mapping_patlas.nf,sha256=Y_Lh7nnoe01g7JgYmW7tIQr1yFDMD3L9GRvdjNwft2Q,2466
flowcraft/generator/templates/mash_dist.nf,sha256=VUtZHyrSu7CwN2AHqtaXcwByrItUivECixj8zlD-9pw,1289
flowcraft/generator/templates/mash_screen.nf,sha256=Q6N4BndCfabQnxBsOlAcKZ1FMMkvgXc3a_tM5Tzh9yY,1571
flowcraft/generator/templates/megahit.nf,sha256=Hsi4ZJel7UHoj3iSvgqZElSGzHIVQzWacVsBYlR327M,628
flowcraft/generator/templates/metamlst.nf,sha256=NfVYO08VNZKrt5cPAnyPzSafF_XyORqzTmlGy4jRNfo,791
flowcraft/generator/templates/metaprob.nf,sha256=QV3vzDM7qZNVHAN7crM3NaRWL6OW2YZGBAI0rVDP1xU,704
flowcraft/generator/templates/metaspades.nf,sha256=RdQlasfDB8BTkyF2QzTE2VN0K5-6DFeCn1p1N4ndBMU,646
flowcraft/generator/templates/midas_species.nf,sha256=NkKV6sU9Bdplp5GB4cmB2lsUXdWCE4NB-1BMaV4qoAw,721
flowcraft/generator/templates/mlst.nf,sha256=DmeqHojgPAO3n3r0F1lNTHUuUqdeeYnC5pftoixZrfY,1478
flowcraft/generator/templates/params.config,sha256=MusJDpV4D9adYlybgAbtwMtusxE7WKzkbkVzTen6fCs,29
flowcraft/generator/templates/patho_typing.nf,sha256=JFtxBke1TmsJx0mDMo_dGQ7serCmy99VSMkYyxrTcjA,1189
flowcraft/generator/templates/patlas_consensus.nf,sha256=t2Y_nxrwQDzhPYR7XT9-MdHzNYY07-Sa-12EooHAhC8,346
flowcraft/generator/templates/pilon.nf,sha256=pEB6zpeJ7r5Km5RxQcMB7EbYjk8WtId3EFqNVx2elNc,1979
flowcraft/generator/templates/pipeline_graph.html,sha256=4xUfQ1sI8DCZlF_WfhFLEoAdlD19X4TskH8_er8jjq0,9119
flowcraft/generator/templates/post.txt,sha256=6qRvrawPde9wGDLCHBwv7Z_vLqDomhK_zSIEa5uGZbo,655
flowcraft/generator/templates/process_skesa.nf,sha256=Kq0cK2glXQ_-S5PdqSR80yfMZNwHh5QIcZnzx6bz-74,778
flowcraft/generator/templates/process_spades.nf,sha256=6ueCM5ZaYshDcVHAS6GXOZhLx2cvChHcPBEasuTta9o,784
flowcraft/generator/templates/prokka.nf,sha256=u2Q-gKeCcaIb1S6B-M_1WHA71uL3ssxlyDYCzDwtD0M,675
flowcraft/generator/templates/reads_download.nf,sha256=b0aiFM1RbzrQAMUIYxZU16OVlF3QtZ5XkSzVagINqPg,1211
flowcraft/generator/templates/remove_host.nf,sha256=gXk25r1_o5sx-G6_cIgSvXbs0V7y_HzFB_oOoryxD_Y,1078
flowcraft/generator/templates/report_compiler.nf,sha256=yBvxyZ9qvbygcdn3lDOpsn6_DcFEfANj0BXDWljiiSI,895
flowcraft/generator/templates/report_post.txt,sha256=UqpyFbiBiK0ry6XGskSVOgpQka0rG4hnhU1E3WRXgiA,500
flowcraft/generator/templates/resources.config,sha256=i2kMQ1ifuG1q5yR5UQcbuq4c0PwfGgZJW-U72Ihs9qY,31
flowcraft/generator/templates/seq_typing.nf,sha256=bKaJskO_aIPLcNIDTIqu0P48-9ILQSqGRckjybDB9dQ,1190
flowcraft/generator/templates/sistr.nf,sha256=PNQcW4RinioTDPEbRmQ-zME76bVf_B_7RuStWoESI_Q,859
flowcraft/generator/templates/skesa.nf,sha256=1SOSaF36MYbxZB8ehlSwrXp47RMZM5V7di8I5EuEnjM,531
flowcraft/generator/templates/spades.nf,sha256=aeEqxDnTa4NZSOoOzEU04jVP6h1nNH1ACtGT7Z_8BDM,654
flowcraft/generator/templates/status_compiler.nf,sha256=d8OafYA98o7t-PDBHfF6d9HX0YhBr6ci2Ypn6mYviYw,1735
flowcraft/generator/templates/trace_compiler.nf,sha256=AQ32B3xzfL5a8F-Q6Vg78EqIitF1ZR9JqKHU2mucVbY,219
flowcraft/generator/templates/trimmomatic.nf,sha256=6CCfcXKJGeMOZPrjlB2rcs7D872jIjBP2QjjyskxsnU,720
flowcraft/generator/templates/true_coverage.nf,sha256=K-fnN2wgvlP0X1gCUofvJg3_zSv_FVPDJAx6xXtYUB4,831
flowcraft/generator/templates/user.config,sha256=mjeV9jLQPD6a9jpne-oXktVNTryuNXGFhTZo5DCnRxo,153
flowcraft/lib/CheckParams.groovy,sha256=fiOTVYdjM2mRoOXq0xpiibXTFzAKrKgPcxxj2coo5UU,1851
flowcraft/templates/__init__.py,sha256=E5w5-EvkD4lixgvD5OkBu8z7xIy7MDpQ5Cx3R9dhnyU,48
flowcraft/templates/assembly_report.py,sha256=wMi56GjmUg5iFQkM0NcQLNCdP43xTcK04FWZgD77XTc,14441
flowcraft/templates/fastqc.py,sha256=3udi67V_HeeRkFP1aNqXnqyip_wdgI4qkjQCEtUolO8,7045
flowcraft/templates/fastqc_report.py,sha256=3z50r5rk-3o7plFwAL-H9Jvf76UsRsLnAnhIXWpY9-8,20810
flowcraft/templates/integrity_coverage.py,sha256=o92EsgO6_ppMOMYK5cngRDZrtvWk9vUi8shUYjTtAw8,15357
flowcraft/templates/mapping2json.py,sha256=h6F2L8dCrXqBXw3KyoJTKsqEDyeZEJpM56LWG6zMSec,5073
flowcraft/templates/mashdist2json.py,sha256=W4bzuTOQId9J0TLLdDN6lBTD09LIjEhaiTRYedfB_48,3382
flowcraft/templates/mashscreen2json.py,sha256=kkvzZYf4FLEvP__3jigKj-FHGzI1nNkbpWzspRtMKWM,3431
flowcraft/templates/megahit.py,sha256=ZEmzh-OAwf_89uofW8ggYTPTotpITUSmvcHNjHidJHo,6461
flowcraft/templates/metaspades.py,sha256=VGJvVsoZxBVOWOJ73g88CyieHgY7MUD-GZNFpu90Qpc,5890
flowcraft/templates/pATLAS_consensus_json.py,sha256=tXUSqxMQxYgQLyqPJOrbL-xtzcWCzh4sNXQZOn4r_84,2254
flowcraft/templates/pipeline_status.py,sha256=YK11dng-4jaZCyru7nxhLdIbFK5bRgmToY_TOjnLN90,4074
flowcraft/templates/process_abricate.py,sha256=PiZiDdhDbYkVH_2ya7jwC-rYQRTuvtlkt2M5AIaSIyU,14680
flowcraft/templates/process_assembly.py,sha256=OaQLZjWU0CBH00n0tnfN5Hq5BmFX7hE_Q7iOGxvjQ6w,18603
flowcraft/templates/process_assembly_mapping.py,sha256=tUdm0a5rkVwrqVqIzc0TsfcQ9IINFFb7YHB8H8J3jFg,21089
flowcraft/templates/skesa.py,sha256=4CBKh2GktqU665ahxAHEQ29vgebwIR9USQ57U81G_YU,3454
flowcraft/templates/spades.py,sha256=CaXV5tRqToCn8P5-LW4jKA9WzZ8hTLuzyHuexmwsNPs,6423
flowcraft/templates/trimmomatic.py,sha256=oyFiVTwcSVIRly1SEUmNqxLnsL4RAjkEhbiEQRjXWTA,11394
flowcraft/templates/trimmomatic_report.py,sha256=z_Nqc2VTOCeQHs9FDs-UcDU8XAbI4m4Mt9aE_e3v99U,4762
flowcraft/templates/flowcraft_utils/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
flowcraft/templates/flowcraft_utils/flowcraft_base.py,sha256=K2KAyn7WBF_V6UNcQwwVj4itob-QvVCrKKkybV0QJ8k,3993
flowcraft-1.1.0.data/data/LICENSE,sha256=jOtLnuWt7d5Hsx6XXB2QxzrSe2sWWh3NgMfFRetluQM,35147
flowcraft-1.1.0.dist-info/DESCRIPTION.rst,sha256=v09dyjVg-RJjqgjKNADrFDUnhCBOVHEimqrnUxMDP8c,10049
flowcraft-1.1.0.dist-info/METADATA,sha256=dlsHKNFpHutHkpjCURVSmWkNJm31hV63X6DWfv0f9D8,10517
flowcraft-1.1.0.dist-info/RECORD,,
flowcraft-1.1.0.dist-info/WHEEL,sha256=rNo05PbNqwnXiIHFsYm0m22u4Zm6YJtugFG2THx4w3g,92
flowcraft-1.1.0.dist-info/entry_points.txt,sha256=mELUezOZXPc1s9SnExSG_ZmCShqY75fbxxiavilLE8E,56
flowcraft-1.1.0.dist-info/metadata.json,sha256=lW-OnCSH0ZyxUZ1xpHuGATWhxD2CXiZWbVOuhbu8eBg,809
flowcraft-1.1.0.dist-info/top_level.txt,sha256=-kys7Qaaz88vuxxMLK5wGdkXfWZC4_hedEX3a0az4p0,10
